View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8045_high_24 (Length: 288)

Name: NF8045_high_24
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8045_high_24
NF8045_high_24
[»] chr4 (10 HSPs)
chr4 (6-270)||(31020631-31020895)
chr4 (6-270)||(31030512-31030776)
chr4 (132-265)||(31488783-31488916)
chr4 (69-269)||(31496075-31496275)
chr4 (71-269)||(31501241-31501445)
chr4 (132-218)||(31151186-31151272)
chr4 (59-269)||(31476122-31476335)
chr4 (144-265)||(31529297-31529418)
chr4 (189-269)||(31160034-31160114)
chr4 (166-220)||(31023588-31023642)
[»] chr2 (1 HSPs)
chr2 (136-269)||(17437875-17438008)
[»] chr6 (13 HSPs)
chr6 (135-265)||(33307251-33307381)
chr6 (132-266)||(33403375-33403509)
chr6 (136-268)||(33361260-33361392)
chr6 (144-269)||(12782261-12782386)
chr6 (136-269)||(33060316-33060449)
chr6 (132-268)||(33265644-33265780)
chr6 (132-268)||(33274788-33274924)
chr6 (132-263)||(33412685-33412816)
chr6 (144-269)||(12785700-12785825)
chr6 (133-269)||(31566307-31566443)
chr6 (133-269)||(33390834-33390970)
chr6 (144-269)||(33288336-33288461)
chr6 (132-264)||(33641799-33641931)
[»] scaffold1749 (1 HSPs)
scaffold1749 (66-269)||(907-1104)
[»] scaffold0428 (1 HSPs)
scaffold0428 (66-269)||(9668-9865)


Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 6 - 270
Target Start/End: Complemental strand, 31020895 - 31020631
Alignment:
Q  6 tgagacttgagaagcaccactgataatttcataggaactcagtattcatagtcaatttagcatattcagatggctagcagcagcaactcctcttcttcat 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||     
T  31020895 tgagacttgagaagcaccactgataatttcataggaactcagtattcataatcaacttagcatattcagatggctagcagcagcaactcctcttcttcag 31020796  T
Q  106 ctcttatggcattgccaaggaggaagaattattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgc 205  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31020795 ctcttatggcattgccaaggaggaagaattattatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgc 31020696  T
Q  206 ccttcaaagaaaaggcatttttgcatttagagacgacgctaatcttcaaaaaggtgaatccatac 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31020695 ccttcaaagaaaaggcatttttgcatttagagacgacgctaatcttcaaaaaggtgaatccatac 31020631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 6 - 270
Target Start/End: Complemental strand, 31030776 - 31030512
Alignment:
Q  6 tgagacttgagaagcaccactgataatttcataggaactcagtattcatagtcaatttagcatattcagatggctagcagcagcaactcctcttcttcat 105  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  31030776 tgagacttgagaagcaccactgataatttcataggaactcagcattcataatcaatttagcatattcagatggctagcagcagcaactcctcttcttcag 31030677  T
Q  106 ctcttatggcattgccaaggaggaagaattattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgc 205  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31030676 ctcttatggcattgccaaggaggaagaattattatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgc 31030577  T
Q  206 ccttcaaagaaaaggcatttttgcatttagagacgacgctaatcttcaaaaaggtgaatccatac 270  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31030576 ccttcaaagaaaaggcatttttgcatttagagacgacactaatcttcaaaaaggtgaatccatac 31030512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 132 - 265
Target Start/End: Original strand, 31488783 - 31488916
Alignment:
Q  132 aattattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcat 231  Q
    ||||||||| | |||||||||||||| ||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |    
T  31488783 aattattatgacgtgtttgtcaccttcagaggtgaagatactcgcttcaactttactgatcatctttttgctgcccttcaaagaaaaggcatttttgcgt 31488882  T
Q  232 ttagagacgacgctaatcttcaaaaaggtgaatc 265  Q
    ||||||| ||| |||| |||||||||||||||||    
T  31488883 ttagagatgacactaagcttcaaaaaggtgaatc 31488916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 69 - 269
Target Start/End: Original strand, 31496075 - 31496275
Alignment:
Q  69 attcagatggctagcagcagcaactcctcttcttcatctcttatggcattgccaaggaggaagaattattataatgtgtttgtcacctttagaggcgaag 168  Q
    ||||||||||||||||||||||||||| |||||||| ||||  || ||| |||||||||||  ||| ||||| | |||||||||||||||||||| || |    
T  31496075 attcagatggctagcagcagcaactccacttcttcagctctagtgacatcgccaaggaggagcaatcattatgacgtgtttgtcacctttagaggtgagg 31496174  T
Q  169 atactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacgctaatcttcaaaaaggtgaatccat 268  Q
    | ||||||  ||| |||| |||||||||||||| | || | || ||| ||||||||| |||||||||||| ||| ||||||||| |||||||||||||||    
T  31496175 acactcgcaacaatttcactgatcatctttttgataccttccacagagaaggcatttctgcatttagagatgacactaatcttccaaaaggtgaatccat 31496274  T
Q  269 a 269  Q
    |    
T  31496275 a 31496275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 269
Target Start/End: Original strand, 31501241 - 31501445
Alignment:
Q  71 tcagatggctagcagcagcaactcctcttcttcatctcttatggc------attgccaaggaggaagaattattataatgtgtttgtcacctttagaggc 164  Q
    ||||||||||||||||| |||||||||||||||  ||||| || |      | ||||||||||||||||||||||| ||| ||||||||| ||||||||     
T  31501241 tcagatggctagcagcaacaactcctcttcttcggctcttgtgactgtgacactgccaaggaggaagaattattatgatgcgtttgtcacttttagaggt 31501340  T
Q  165 gaagatactcgcttcaacttcattgatcatctttttgctgcccttcaa-agaaaaggcatttttgcatttagagacgacgctaatcttcaaaaaggtgaa 263  Q
    ||||| ||||||  ||| |||| | |||||||||||| || ||||||| ||| |||||||| |||||||||| || ||| ||||||||| ||||||||||    
T  31501341 gaagacactcgcaacaatttcacttatcatctttttgatg-ccttcaacagagaaggcattcttgcatttagggatgacactaatcttccaaaaggtgaa 31501439  T
Q  264 tccata 269  Q
    ||||||    
T  31501440 tccata 31501445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 31151272 - 31151186
Alignment:
Q  132 aattattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaa 218  Q
    ||||||||| | |||||||||| |||||||||  ||||||| ||| ||||||||| ||||||||||||||||||||| |||||||||    
T  31151272 aattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaa 31151186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 269
Target Start/End: Original strand, 31476122 - 31476335
Alignment:
Q  59 aatttagcatattcagatggctagcagcagcaactcctcttcttcatctcttatggcattgccaaggaggaa---gaattattataatgtgtttgtcacc 155  Q
    |||||| | |||||| ||||||||||||| |||| ||||||||| | ||||  || |||||||||  | |||   ||| | |||| | |||||||| | |    
T  31476122 aatttatcttattcatatggctagcagcaacaacccctcttctttagctctggtgacattgccaaaaaagaaaaagaacttttatgacgtgtttgtgagc 31476221  T
Q  156 tttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacgctaatcttcaaa 255  Q
    || ||||| ||||||||||||  ||| |||| ||||   ||||||| ||||||  ||  ||||||  ||||||||||||| || ||| ||||||||||||    
T  31476222 ttcagaggtgaagatactcgcaacaatttcactgatttcctttttgatgccctcgaagaaaaaggtgtttttgcatttagggatgacactaatcttcaaa 31476321  T
Q  256 aaggtgaatccata 269  Q
    ||||||||||||||    
T  31476322 aaggtgaatccata 31476335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 265
Target Start/End: Complemental strand, 31529418 - 31529297
Alignment:
Q  144 gtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacg 243  Q
    |||||| ||| ||| ||||| | ||| || || |||||||||| ||||||||||||| | ||||| |||| || ||||||| ||||||||||||| |||     
T  31529418 gtgtttatcagcttcagaggagcagacacacgattcaacttcactgatcatcttttttccgccctccaaataagaggcattgttgcatttagagatgaca 31529319  T
Q  244 ctaatcttcaaaaaggtgaatc 265  Q
    |||| ||| | |||||||||||    
T  31529318 ctaagcttaagaaaggtgaatc 31529297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 269
Target Start/End: Complemental strand, 31160114 - 31160034
Alignment:
Q  189 gatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacgctaatcttcaaaaaggtgaatccata 269  Q
    |||||||||||||||||||||||||||||||||||  ||||||| || || ||  |||| ||  | |||||||||||||||    
T  31160114 gatcatctttttgctgcccttcaaagaaaaggcatcgttgcattcagggatgattctaacctgaagaaaggtgaatccata 31160034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 31023642 - 31023588
Alignment:
Q  166 aagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaagg 220  Q
    |||| ||||||| ||||||||||||||||||||||||| || | | |||||||||    
T  31023642 aagacactcgctacaacttcattgatcatctttttgcttccttccgaagaaaagg 31023588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 136 - 269
Target Start/End: Original strand, 17437875 - 17438008
Alignment:
Q  136 attataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttag 235  Q
    ||||| |||||||||||||||||||||| ||||||||||||  ||| |||| ||||  ||||||||  |||||| ||||||||| ||||||||||||| |    
T  17437875 attatgatgtgtttgtcacctttagaggtgaagatactcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcg 17437974  T
Q  236 agacgacgctaatcttcaaaaaggtgaatccata 269  Q
    ||| ||| ||||||||||||||||||||||||||    
T  17437975 agatgacactaatcttcaaaaaggtgaatccata 17438008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 135 - 265
Target Start/End: Complemental strand, 33307381 - 33307251
Alignment:
Q  135 tattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcattta 234  Q
    |||||| |||||||||||||||| ||||| ||||| ||||||  |||||| | ||||  |||||||| ||||||| ||| |||||||||||||||||||     
T  33307381 tattatgatgtgtttgtcaccttcagaggtgaagacactcgcaacaactttactgattttctttttgatgcccttgaaacaaaaggcatttttgcatttc 33307282  T
Q  235 gagacgacgctaatcttcaaaaaggtgaatc 265  Q
    | || ||| ||||||||||||| ||||||||    
T  33307281 gggatgacactaatcttcaaaagggtgaatc 33307251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 266
Target Start/End: Complemental strand, 33403509 - 33403375
Alignment:
Q  132 aattattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcat 231  Q
    ||||||||  |||||||| ||||||||||||| ||||| |||||   ||| |||| ||||  |||||||| ||||||| ||| |||||||||||||||||    
T  33403509 aattattacgatgtgtttatcacctttagaggtgaagacactcggaacaatttcactgattttctttttgatgcccttgaaacaaaaggcatttttgcat 33403410  T
Q  232 ttagagacgacgctaatcttcaaaaaggtgaatcc 266  Q
    || |||| ||| ||||||||||| | |||||||||    
T  33403409 ttcgagatgacactaatcttcaacagggtgaatcc 33403375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 268
Target Start/End: Complemental strand, 33361392 - 33361260
Alignment:
Q  136 attataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttag 235  Q
    ||||| |||||||||||| ||||||||| ||||| ||||||  ||| |||| ||||  |||||||| ||||||||||| |||||||||| ||| ||||      
T  33361392 attatgatgtgtttgtcatctttagaggtgaagacactcgcaacaatttcactgattttctttttgatgcccttcaaacaaaaggcattattgtattttt 33361293  T
Q  236 agacgacgctaatcttcaaaaaggtgaatccat 268  Q
     || ||| ||||||||| |||||||||||||||    
T  33361292 ggatgacactaatcttccaaaaggtgaatccat 33361260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 269
Target Start/End: Complemental strand, 12782386 - 12782261
Alignment:
Q  144 gtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacg 243  Q
    |||||||| | ||| ||||||  ||| || || ||||| |||| |||||||||||||| |||||||||||||||| | |||||| |||| ||||| |||     
T  12782386 gtgtttgtgagcttcagaggcacagacacacgtttcaatttcactgatcatctttttggtgcccttcaaagaaaaagaatttttacattcagagatgaca 12782287  T
Q  244 ctaatcttcaaaaaggtgaatccata 269  Q
    ||||||||||||||||| | ||||||    
T  12782286 ctaatcttcaaaaaggtaattccata 12782261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 269
Target Start/End: Complemental strand, 33060449 - 33060316
Alignment:
Q  136 attataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttag 235  Q
    ||||| |||||||||||||||||||||| ||||||||||||  ||| |||| ||||  |||||||| ||||||| ||| |||||||||| | | |||| |    
T  33060449 attatgatgtgtttgtcacctttagaggtgaagatactcgcaacaatttcactgattttctttttgatgcccttgaaacaaaaggcattatggtatttcg 33060350  T
Q  236 agacgacgctaatcttcaaaaaggtgaatccata 269  Q
     || | |  |||||||||||||||||||| ||||    
T  33060349 ggatgtcattaatcttcaaaaaggtgaatgcata 33060316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 132 - 268
Target Start/End: Complemental strand, 33265780 - 33265644
Alignment:
Q  132 aattattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcat 231  Q
    ||||||||| |||| ||||||||||| ||||| |||||||||||   ||| ||||  |||  |||||||| ||||||||||| |||||||||| ||| ||    
T  33265780 aattattatgatgtatttgtcaccttcagaggtgaagatactcggaacaatttcacagattttctttttgatgcccttcaaacaaaaggcattattgtat 33265681  T
Q  232 ttagagacgacgctaatcttcaaaaaggtgaatccat 268  Q
    ||   || ||| ||||||||| |||||||||||||||    
T  33265680 tttcggatgacactaatcttccaaaaggtgaatccat 33265644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 132 - 268
Target Start/End: Complemental strand, 33274924 - 33274788
Alignment:
Q  132 aattattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcat 231  Q
    ||||||||| |||| ||||||||||| ||||| |||||||||||   ||| ||||  |||  |||||||| ||||||||||| |||||||||| ||| ||    
T  33274924 aattattatgatgtatttgtcaccttcagaggtgaagatactcggaacaatttcacagattttctttttgatgcccttcaaacaaaaggcattattgtat 33274825  T
Q  232 ttagagacgacgctaatcttcaaaaaggtgaatccat 268  Q
    ||   || ||| ||||||||| |||||||||||||||    
T  33274824 tttcggatgacactaatcttccaaaaggtgaatccat 33274788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 263
Target Start/End: Complemental strand, 33412816 - 33412685
Alignment:
Q  132 aattattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcat 231  Q
    ||||||||| |||||||||||||||| ||||| ||||| ||||||  ||| |||| |||| ||||||||| ||| ||| |||  ||||| |||| |||||    
T  33412816 aattattatgatgtgtttgtcaccttcagaggtgaagacactcgcaacaatttcactgattatctttttgatgcacttgaaaccaaaggtatttatgcat 33412717  T
Q  232 ttagagacgacgctaatcttcaaaaaggtgaa 263  Q
    |||| || ||| | |||||| |||||||||||    
T  33412716 ttagggatgacacaaatcttaaaaaaggtgaa 33412685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 269
Target Start/End: Complemental strand, 12785825 - 12785700
Alignment:
Q  144 gtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacg 243  Q
    |||||||| | ||||||||||  ||| || |||||||| ||||  |||||||||||||||||||| ||||||  |||||||  |||||| ||||| |||     
T  12785825 gtgtttgtgagctttagaggcccagacacacgcttcaatttcaccgatcatctttttgctgccctacaaagacgaggcattaatgcattcagagatgaca 12785726  T
Q  244 ctaatcttcaaaaaggtgaatccata 269  Q
    |||| ||| |||||||||||| ||||    
T  12785725 ctaaacttaaaaaaggtgaattcata 12785700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 269
Target Start/End: Original strand, 31566307 - 31566443
Alignment:
Q  133 attattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatt 232  Q
    |||||||| |||| |||||||| || ||||| ||||| ||||||  ||| |||||||||  |||||||| |||| || ||| |||||| ||||||| |||    
T  31566307 attattatgatgtatttgtcactttcagaggtgaagacactcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatt 31566406  T
Q  233 tagagacgacgctaatcttcaaaaaggtgaatccata 269  Q
    | | || ||  | ||||||||||||||||||||||||    
T  31566407 tcgggatgatacaaatcttcaaaaaggtgaatccata 31566443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 269
Target Start/End: Complemental strand, 33390970 - 33390834
Alignment:
Q  133 attattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatt 232  Q
    |||||||| ||||||||||||||||  |||| ||||| ||||||  ||| |||||||||  |||||||| ||||||  ||| |||||||||| ||| |||    
T  33390970 attattatgatgtgtttgtcaccttccgaggtgaagacactcgcaacaatttcattgattttctttttgatgccctggaaacaaaaggcattcttgtatt 33390871  T
Q  233 tagagacgacgctaatcttcaaaaaggtgaatccata 269  Q
    | | ||  ||   ||||||||||||||||||||||||    
T  33390870 tcgggataacagaaatcttcaaaaaggtgaatccata 33390834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 269
Target Start/End: Complemental strand, 33288461 - 33288336
Alignment:
Q  144 gtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacg 243  Q
    |||||| |||||||||||||||| || ||||||  ||| |||| || | |||| || | ||| ||| ||| ||| || |||| ||||||||| || |||     
T  33288461 gtgtttatcacctttagaggcgatgacactcgcaacaatttcactggttatctattagatgctcttaaaacaaacggtatttatgcatttagggatgaca 33288362  T
Q  244 ctaatcttcaaaaaggtgaatccata 269  Q
    | ||||||||||||||||||||||||    
T  33288361 ccaatcttcaaaaaggtgaatccata 33288336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 264
Target Start/End: Original strand, 33641799 - 33641931
Alignment:
Q  132 aattattataatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcat 231  Q
    ||||||||| |||||||||||||||  ||||| ||||| ||||||  ||| || | ||||  |||||||| ||||||| ||  |||||||||| | | ||    
T  33641799 aattattatgatgtgtttgtcacctacagaggtgaagacactcgcaacaatttgactgattttctttttgatgcccttgaatcaaaaggcattatggtat 33641898  T
Q  232 ttagagacgacgctaatcttcaaaaaggtgaat 264  Q
    || | || |||  ||||||||||||||||||||    
T  33641899 ttcgggatgacattaatcttcaaaaaggtgaat 33641931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 269
Target Start/End: Complemental strand, 1104 - 907
Alignment:
Q  66 catattcagatggctagcagcagcaactcctcttcttcatctcttatggcattgccaaggaggaagaattattataatgtgtttgtcacctttagaggcg 165  Q
    ||||||||||||||||||||||||||||| ||| |  |   |||  || | ||||||||||| ||   || |||| | |||||||||||||| ||||| |    
T  1104 catattcagatggctagcagcagcaactcgtctacggc---tctggtgcctttgccaaggagaaa---ttgttatgacgtgtttgtcaccttcagaggtg 1011  T
Q  166 aagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacgctaatcttcaaaaaggtgaatc 265  Q
    |||||||||||  ||| |||| | ||  |||||||||||||||| |||||||||| |||| ||| || || || ||| | ||||||| ||| ||||||||    
T  1010 aagatactcgcaacaatttcactaattttctttttgctgcccttgaaagaaaaggtatttatgctttcagggatgacacaaatcttccaaagggtgaatc 911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 269
Target Start/End: Complemental strand, 9865 - 9668
Alignment:
Q  66 catattcagatggctagcagcagcaactcctcttcttcatctcttatggcattgccaaggaggaagaattattataatgtgtttgtcacctttagaggcg 165  Q
    ||||||||||||||||||||||||||||| ||| |  |   |||  || | ||||||||||| ||   || |||| | |||||||||||||| ||||| |    
T  9865 catattcagatggctagcagcagcaactcgtctacggc---tctggtgcctttgccaaggagaaa---ttgttatgacgtgtttgtcaccttcagaggtg 9772  T
Q  166 aagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacgctaatcttcaaaaaggtgaatc 265  Q
    |||||||||||  ||| |||| | ||  |||||||||||||||| |||||||||| |||| ||| || || || ||| | ||||||| ||| ||||||||    
T  9771 aagatactcgcaacaatttcactaattttctttttgctgcccttgaaagaaaaggtatttatgctttcagggatgacacaaatcttccaaagggtgaatc 9672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University