View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8045_high_26 (Length: 266)
Name: NF8045_high_26
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8045_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 8435829 - 8436067
Alignment:
| Q |
13 |
aatattttcaaccggcaccgtaattaaccaatatatggtttttt-gttgtttataataaatttcctttctcacagtagttctaccatatatttaatacaa |
111 |
Q |
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| T |
8435829 |
aatattttcaaccggcaccgtaattaaccaatatatggtttttttgttggttataataaatttcctttctcacagtagttctaccatatctttaatacaa |
8435928 |
T |
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| Q |
112 |
aatatttcagtc-agtaaaattaaaaaccaatttcaaaccaatgaataaaaggataatatcaaagaatgcagaaagagtagacagaatttgttgagcaat |
210 |
Q |
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| T |
8435929 |
aatatttcaatatactaaaattaaaaaccaatttcaaataaatgaataaaaggatcaaatcaaagaatgcagaaagagtagacagaatttgttgagcaat |
8436028 |
T |
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| Q |
211 |
acattatttaaaaacacactagctaactagcattaaatt |
249 |
Q |
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| T |
8436029 |
acattatttaaaaacacactagctaactagcattaaatt |
8436067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 8442336 - 8442400
Alignment:
| Q |
128 |
aaattaaaaaccaatttcaaaccaatgaataaaaggataatatcaaagaatgcagaaagagtaga |
192 |
Q |
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| T |
8442336 |
aaattaaaaaccaatttcaaacaaatgaataaaaggataaaatcaaagaatgcagaaagaataga |
8442400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 8442210 - 8442265
Alignment:
| Q |
67 |
ataaatttcctttctcacagtagttctaccatatatttaatacaaaatatttcagt |
122 |
Q |
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| T |
8442210 |
ataaatttcctttctcatggtatttctaccctatctttaatacaaaatatttcagt |
8442265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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