View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8045_high_33 (Length: 224)
Name: NF8045_high_33
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8045_high_33 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 41810564 - 41810754
Alignment:
| Q |
15 |
atgaagtccaaagaaagagaagaggaactatctgctatcatgaagaaactcgaaaataaggagaatgcgtcattacatgctcagaaaaatgaactggaag |
114 |
Q |
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| T |
41810564 |
atgaagtccaaagaaagagaagaggaactatctgctatcatgaagaaactcgaaaataaggagaatgcgtcattacatgctcagaaaaatgaactggaag |
41810663 |
T |
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| Q |
115 |
agcagaagattgttaaaagtaatgaagcttcaactcgggccgaaagcaatacaaatgaggtgaatgtattgcggcaggaagtggagtctct |
205 |
Q |
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| T |
41810664 |
agcagaagattgttaaaagtaatgaagcttcaactcgggccgaaagcaatacaaatgaggtgaatgtattgcggcaggaagtggagtctct |
41810754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 41797444 - 41797565
Alignment:
| Q |
84 |
tcattacatgctcagaaaaatgaactggaagagcagaagattgttaaaagtaatgaagcttcaactcgggccgaaagcaatacaaatgaggtgaatgtat |
183 |
Q |
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||||||||||||||||||||||||||||||||| | | ||| |||||||||||||||| |||||||| | ||||||| |||||||||| ||||||| | |
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| T |
41797444 |
tcattacatgctcagaaaaatgaactggaagagaaaataatttttaaaagtaatgaagcctcaactcgagttgaaagcattacaaatgagctgaatgttt |
41797543 |
T |
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| Q |
184 |
tgcggcaggaagtggagtctct |
205 |
Q |
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||| |||||||||||||||||| |
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| T |
41797544 |
tgcagcaggaagtggagtctct |
41797565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 41797051 - 41797172
Alignment:
| Q |
84 |
tcattacatgctcagaaaaatgaactggaagagcagaagattgttaaaagtaatgaagcttcaactcgggccgaaagcaatacaaatgaggtgaatgtat |
183 |
Q |
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| T |
41797051 |
tcattacatgctcagaaaactgaactggaagaacatataattcttaaaagtaatgaagcctcaactcgagtcgaaagcattacaaatgagctgaatgcat |
41797150 |
T |
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| Q |
184 |
tgcggcaggaagtggagtctct |
205 |
Q |
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| | |||||||||||||||||| |
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| T |
41797151 |
tacagcaggaagtggagtctct |
41797172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 41796922 - 41796988
Alignment:
| Q |
15 |
atgaagtccaaagaaagagaagaggaactatctgctatcatgaagaaactcgaaaataaggagaatg |
81 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| || |||| ||||||| |
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| T |
41796922 |
atgaagtccaaagaaagagaagaggagctatctgctatcatgaagaaactcaaagataatgagaatg |
41796988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 41797324 - 41797381
Alignment:
| Q |
24 |
aaagaaagagaagaggaactatctgctatcatgaagaaactcgaaaataaggagaatg |
81 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||| || |||| ||||||| |
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| T |
41797324 |
aaagaaagagaggaggaactatctgatatcatgaagaaactcaaagataatgagaatg |
41797381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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