View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8045_high_38 (Length: 206)
Name: NF8045_high_38
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8045_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 4362428 - 4362527
Alignment:
| Q |
16 |
aatatctgagaaaagtttatataaaatttcatcattcaggtcaatacaatataaaagtcaatacattcgaaacaccaccaaattatcaaggggtgcattg |
115 |
Q |
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| T |
4362428 |
aatatctaagaaaagtttatataaaatttcatcattcaggtcaatacaatataaaagtcaatacattcggaacaccaccaaattatccaggggtgcattg |
4362527 |
T |
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Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 4362555 - 4362599
Alignment:
| Q |
143 |
cctaataattcaacatgcttttaataactatatacatgacccatc |
187 |
Q |
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| T |
4362555 |
cctaataattcaacatgcttttaataactatatacatgacccatc |
4362599 |
T |
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