View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8045_high_5 (Length: 600)
Name: NF8045_high_5
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8045_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 8 - 584
Target Start/End: Complemental strand, 3684813 - 3684238
Alignment:
| Q |
8 |
aaagaacccaataatttcctttgtatacctatcaagaagacaaaggtaacattacctacatttcatgtctttatttttccatttaaaataaaaaatctag |
107 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3684813 |
aaagaacccagtaatttcctttgtatacctatcaaga---caaaggtaacattacctacatttcatgtccttatttttccatttaaaataaaaaatctag |
3684717 |
T |
|
| Q |
108 |
aactcaatata--aatgaatttcatactttaatttacttcaaacactttcatttgttaatggagtgtatcaacaacgcttatataatctgaaattgtatc |
205 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3684716 |
aactcaatatataaacgaatttcatactttaatttacttcaaacactttcatttgttaatggagtgtatcaacaacgcttatataatctgaaattgtatc |
3684617 |
T |
|
| Q |
206 |
ggaaagagtgtgaaacaaattatgtcaccatatcaaaccaaaaccaagttgaactatgggtcataataaatataaactataaatgtgaaactctcttagc |
305 |
Q |
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| T |
3684616 |
ggaaagagtgtgaaacaaattatgtcaccatatcaaaccaaaaccaagttgaactatgggtcataataaatctaaactataaatgtgaaactctcttagc |
3684517 |
T |
|
| Q |
306 |
aagaatgaatgtacgattatcgttgaaactgtatatgcgagatccatattgcttgtgaataaattataaactctctcgtgtattgttgttgaattatgtg |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3684516 |
aagaatgaatgtacgattatcgttgaaactgtatatgcgagatccatattgcttgtgaataaattataaactctctcgtgtattgttgttgaattatgtg |
3684417 |
T |
|
| Q |
406 |
ttttggatattgttgttaaaaatatgagtggttattgaaccatgtgcttggtactgtaaaatttccctaagttagatcatgaacatatcatattctaact |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3684416 |
ttttggatattgttgttaaaaatatgagtggttattgaaccatgtgcttggtaccgtaaaatttccctaagttagatcatgaacatatcatattctaact |
3684317 |
T |
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| Q |
506 |
ctcgatcctttcgaccataactaccgatgaaatcttaaacgaaattgaggacatatccaatttaaactactgaacttga |
584 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3684316 |
ctcgatcctttcgaccataactaccgatgaaatcttaaacgaaattgaggacatatccaatttaaactactgaacttga |
3684238 |
T |
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