View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8045_low_11 (Length: 543)
Name: NF8045_low_11
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8045_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 487; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 11 - 525
Target Start/End: Original strand, 41901156 - 41901670
Alignment:
| Q |
11 |
tttggaggtggtggagatttatatgcatataatggagttaatttgggatagggatgtgaatgttttgcatgttgtggggtgtactttgattgtggatatt |
110 |
Q |
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| T |
41901156 |
tttggaggtggtggagatttatatgcatataatggagttaatttgggatagggatgtgaatgttttgcatgttttggggtgtactttgattgtggatatt |
41901255 |
T |
|
| Q |
111 |
ctgcatgcttcgtagggagtggagatttgtgtttatacaatggagttaatttgtgattgggatgtgggtgtttcacgtaataatatggggttttttgtga |
210 |
Q |
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| T |
41901256 |
ctgcatgcttcgtagagagtggagatttgtgtttatacaatggagttaatttgtgattgaggtgtgggtgtttcgcgtaataatatggggttttttgtga |
41901355 |
T |
|
| Q |
211 |
ctgtggatattctacatgctttgtagatggtggagagtagttgtttggctgggatgcataatatggtttataagcagcaacattgatactaatactaatt |
310 |
Q |
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| T |
41901356 |
ccgtggatattctacatgctttgtagatggtggagagtagttgtttggctgggatgcataatatggtttataagcagcaacattgatactaatactaatt |
41901455 |
T |
|
| Q |
311 |
gcaattaggcaaaatgcaattgcatagatgagtggagttcccatcttttatcaatgtgtgcagctactcttgtctttgaaatatgcttgctttggaaatt |
410 |
Q |
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| T |
41901456 |
gcaattaggcaaaatgcaattgcatagatgagtggagttcccatcttttatcaatgtgtgcagctactcttgtctttgaaatatgcttgctttggaaatt |
41901555 |
T |
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| Q |
411 |
aaagtatgcagcatcccctttatatagtgttaccctcttcacaattatgacctacaatatctctttgtgaaagcatcaacattcttgtttaacattttaa |
510 |
Q |
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| T |
41901556 |
aaagtatgcagcatctcctttatatagtgttaccctcttcacaattatgacctacaatatctctttgtgaaagcatcaacattcttgtttaacattttaa |
41901655 |
T |
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| Q |
511 |
attatatgtatgctg |
525 |
Q |
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||||||||||||||| |
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| T |
41901656 |
attatatgtatgctg |
41901670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 41900940 - 41901091
Alignment:
| Q |
11 |
tttggaggtggtggagatttatatgcatataatggagttaatttgggatagggatgtgaatgttttgcatgttgtggggtgtactttgattgtggatatt |
110 |
Q |
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|||||||||||||| ||||| |||| ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41900940 |
tttggaggtggtggggatttgtatgtatatattggagttaattttggatagggatgtgaatgttttgcatgttcaggggtgtactttgattgtggatatt |
41901039 |
T |
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| Q |
111 |
ctgcatgcttcgtagggagtggagatttgtgtttatacaatggagttaattt |
162 |
Q |
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| T |
41901040 |
ctacatgctttgtaggtaatggagatttgtgtttatataatggagttaattt |
41901091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 41900724 - 41900876
Alignment:
| Q |
11 |
tttggaggtggtggagatttatatgcatataatggagttaatttgggatagggatgtgaatgttttgcatgttgtggggtgtactttgattgtggatatt |
110 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||||||||| ||| | ||||| ||||||||||| |||||||| || | |||||||||||||| |
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| T |
41900724 |
tttggaggaggtggagatttatatgtatataatggagttaatttggggtagaggtgtgagtgttttgcatgatgtggggtatattgtgattgtggatatt |
41900823 |
T |
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| Q |
111 |
ctgcatgcttcgtagggagtggagatttgtgtttatacaatggagttaatttg |
163 |
Q |
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| T |
41900824 |
ttgcatactttggaggtggtggggatttgtatgtatataattgagttaatttg |
41900876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 41900832 - 41900997
Alignment:
| Q |
11 |
tttggaggtggtggagatttatatgcatataatggagttaatttgggatagggatgtgaatgttttgcatgttgtggggtgtactttgattgtggatatt |
110 |
Q |
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|||||||||||||| ||||| |||| ||||||| ||||||||||||| ||| | ||||| ||||||||||| |||| |||||| |||||||||||||||| |
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| T |
41900832 |
tttggaggtggtggggatttgtatgtatataattgagttaatttggggtagaggtgtgagtgttttgcatgatgtgaggtgtattttgattgtggatatt |
41900931 |
T |
|
| Q |
111 |
ctgcatgcttcgtagggagtggagatttgtgtttatacaatggagttaatttgtgattgggatgtg |
176 |
Q |
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||||| ||| | ||| |||| ||||||| | |||| | |||||||||||| ||| |||||||| |
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| T |
41900932 |
ttgcatactttggaggtggtggggatttgtatgtatatattggagttaattttggatagggatgtg |
41900997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 41900622 - 41900768
Alignment:
| Q |
17 |
ggtggtggagatttatatgcatataatggagttaatttgggatagggatgtgaatgttttgcatgttgtggggtgtactttgattgtggatattctgcat |
116 |
Q |
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|||||||||||||| |||| ||||||||||| ||||||||| ||| | |||| ||||||||||| ||||||||||| | |||||||||||||| ||||| |
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| T |
41900622 |
ggtggtggagatttgtatgtatataatggagctaatttggggtagaggtgtgcgtgttttgcatgatgtggggtgtattgtgattgtggatattttgcat |
41900721 |
T |
|
| Q |
117 |
gcttcgtagggagtggagatttgtgtttatacaatggagttaatttg |
163 |
Q |
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| || | ||| |||||||||| | | |||| ||||||||||||||| |
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| T |
41900722 |
gttttggaggaggtggagatttatatgtatataatggagttaatttg |
41900768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 176
Target Start/End: Original strand, 41901074 - 41901213
Alignment:
| Q |
37 |
atataatggagttaatttgggatagggatgtgaatgttttgcatgttgtggggtgtactttgattgtggatattctgcatgcttcgtagggagtggagat |
136 |
Q |
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|||||||||||||||||| || ||| | || || ||||||||||| | | ||||||| | ||||||||| | || ||||| || | ||| |||||||| |
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| T |
41901074 |
atataatggagttaatttagggtagaggtgcgagtgttttgcatgatatagggtgtattgtgattgtgggtgttttgcatattttggaggtggtggagat |
41901173 |
T |
|
| Q |
137 |
ttgtgtttatacaatggagttaatttgtgattgggatgtg |
176 |
Q |
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| T |
41901174 |
ttatatgcatataatggagttaatttgggatagggatgtg |
41901213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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