View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8045_low_12 (Length: 493)
Name: NF8045_low_12
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8045_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 70 - 489
Target Start/End: Complemental strand, 24181569 - 24181147
Alignment:
| Q |
70 |
tgacatatattgttcacgtgttagatgatttatttcagtcagtttaaaagataatattatcaagttatataaattttgaatatgtttggaaaatnnnnnn |
169 |
Q |
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| T |
24181569 |
tgacatatattgttcacgtgttagatgatttatttcagtcagtttaaaagataatattatcaagttatataaattttgaatatgtttggaaaataaaaaa |
24181470 |
T |
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| Q |
170 |
nnn---tagtagtaatgtcaacttacatttatgcaggttattaggcttcctcagagtatttgcgataccatatcgacgaaacaacctgcaatttcatttg |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| |
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| T |
24181469 |
taaaaatagtagtaatgtcaacttacatttatgcaggttattaggcttcctcagagtatttgtgatatcttatcgacgaaacaacctgcaatttcatttg |
24181370 |
T |
|
| Q |
267 |
gagagataataataacaaatgtgttcatctggtaggttggaaaaaagtcacttggcataagcattatggcggccttgacatcagaactgcaagagatata |
366 |
Q |
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| T |
24181369 |
gagagataataataacaaatgtgttcatctggtaggttggaaaaaagtcacttggcataagcattatggcggtcttgacatcagaactgcaagagatata |
24181270 |
T |
|
| Q |
367 |
caaacgtttgtttattggccaacttgttagtgatctgattcagtcttcaaaaaacttatgggttgagattctctcagacaggtatgtcactagtccgaat |
466 |
Q |
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| T |
24181269 |
ccaacgtttgcttattgggcaacttattagggatctgattcagtcttcaaaaaacttatgggttgagattctcttagacaggtatgtcactagtacgaat |
24181170 |
T |
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| Q |
467 |
atcctccattcttcatctcactc |
489 |
Q |
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| T |
24181169 |
atcctccattctccatctcactc |
24181147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 196 - 485
Target Start/End: Original strand, 27153854 - 27154139
Alignment:
| Q |
196 |
tatgcaggttattaggcttcctcagagtatttgcgataccatatcgacgaaacaacctgcaatttcatttggagagataataataacaaatgtgttcatc |
295 |
Q |
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| T |
27153854 |
tatgcaggttacttggctccctcagaatatttgtgatag--tatcgaccaaacaaccc-caatttcatcaggaaagataataataacaaatgtattcatt |
27153950 |
T |
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| Q |
296 |
tggtaggttggaaaaaagtcacttggcataagcattatggcggccttgacatcagaactgcaagagatatacaaacgtttgtttattggccaa-cttgtt |
394 |
Q |
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|||| |||||||||||| | ||| ||| |||||| |||||||||| | |||||||| || |||| |||| || |||||||| ||| ||| |||||| |
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| T |
27153951 |
tggttggttggaaaaaaattactcggcccaagcatgatggcggcctcggcatcagaatggc--gagagataccaaaatttgtttaatgggcaagcttgtt |
27154048 |
T |
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| Q |
395 |
agtgatctgattcagtcttcaaaaaacttatgggttgagattctctcagacaggtatgtcactagtccgaatatcctccattcttcatctc |
485 |
Q |
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| || ||||||| |||| || || ||||||||||||||||||||||| |||||| | |||| | ||||||| ||||||| |||||| |
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| T |
27154049 |
tggaatatgattcaatcttttaagaagttatgggttgagattctctcagataggtattttgctaggctaaatatccaccattctccatctc |
27154139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 24179618 - 24179571
Alignment:
| Q |
57 |
ttttatgaatcaatgacatatattgttcacgtgttagatgatttattt |
104 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24179618 |
ttttatgaatcaatgacatatattgttcaattgttagatgatttattt |
24179571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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