View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8045_low_13 (Length: 485)
Name: NF8045_low_13
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8045_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 27981392 - 27980949
Alignment:
| Q |
1 |
acgtactgaaagaaagaataggaccttgaagaacatggtgaggagtatgctcagaagcaagctaacttgtaagaacaaggttctctttcagctcagttac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
27981392 |
acgtactgaaagaaagaataggaccttgaagaacatggtgaggagtatgctcagaagcaagctaacttgtaagaacaaagttctctttcagctcagttac |
27981293 |
T |
|
| Q |
101 |
ttgtaaagcaagctaacttagttacttggatgcttttgctataaataggtatcc-actattgtatttccaacttgaatgaataagaaatcgttttcccct |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27981292 |
ttgtaaagcaagctaacttagttacttggatgcttttgctataaataggtatccaactattgtatttccaacttgaatgaataacaaatcgttttcccct |
27981193 |
T |
|
| Q |
200 |
tacatatttgggatgtccaaatatcattgttgcatagtgaaatacaagcatttttattaacnnnnnnnntgtgaatattcttgtttcatcaattatgata |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
27981192 |
tacatatttgggatgtccaaatatcattgttgcatagtgaaatacaagcatttttattaacaaaaaaaatgtgaatattcttgtttcatcaattatgata |
27981093 |
T |
|
| Q |
300 |
gataatattcttgaaatcttagctgaaaattaacattcttcttgagcaagtgttctcaatcctgagttcaaaaagccaacaagttctatgatttcgtttt |
399 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27981092 |
gataatattcttgaaatcttagttgaaaattaacattcttcttgagcaagtgttctcaatcctgagttcaaaaagtcaacaagttctatgatttcgtttt |
27980993 |
T |
|
| Q |
400 |
gatcaattagcttgcac---cttcttttgttttcattcttccaa |
440 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
27980992 |
gatcaattagcttgcaccttcttcttttgttttcattcttccaa |
27980949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 28038694 - 28038251
Alignment:
| Q |
1 |
acgtactgaaagaaagaataggaccttgaagaacatggtgaggagtatgctcagaagcaagctaacttgtaagaacaaggttctctttcagctcagttac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
28038694 |
acgtactgaaagaaagaataggaccttgaagaacatggtgaggagtatgctcagaagcaagctaacttgtaagaacaaagttctctttcagctcagttac |
28038595 |
T |
|
| Q |
101 |
ttgtaaagcaagctaacttagttacttggatgcttttgctataaataggtatcc-actattgtatttccaacttgaatgaataagaaatcgttttcccct |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
28038594 |
ttgtaaagcaagctaacttagttacttggatgcttttgctataaataggtatccaactattgtatttccaacttgaatgaataacaaatcgttttcccct |
28038495 |
T |
|
| Q |
200 |
tacatatttgggatgtccaaatatcattgttgcatagtgaaatacaagcatttttattaacnnnnnnnntgtgaatattcttgtttcatcaattatgata |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
28038494 |
tacatatttgggatgtccaaatatcattgttgcatagtgaaatacaagcatttttattaacaaaaaaaatgtgaatattcttgtttcatcaattatgata |
28038395 |
T |
|
| Q |
300 |
gataatattcttgaaatcttagctgaaaattaacattcttcttgagcaagtgttctcaatcctgagttcaaaaagccaacaagttctatgatttcgtttt |
399 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
28038394 |
gataatattcttgaaatcttagttgaaaattaacattcttcttgagcaagtgttctcaatcctgagttcaaaaagtcaacaagttctatgatttcgtttt |
28038295 |
T |
|
| Q |
400 |
gatcaattagcttgcac---cttcttttgttttcattcttccaa |
440 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28038294 |
gatcaattagcttgcaccttcttcttttgttttcattcttccaa |
28038251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 126 - 440
Target Start/End: Complemental strand, 27887950 - 27887636
Alignment:
| Q |
126 |
ttggatgcttttgctataaataggtatcca-ctattgtatttccaacttgaatgaataagaaatcgttttccccttacatatttgggatgtccaaatatc |
224 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||| |
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|
| T |
27887950 |
ttggatacttttgctataaataggtatccaactattgtatttccaacttgaatgaataacaaatcgttttccgtttacatatttgggatgtccaactatc |
27887851 |
T |
|
| Q |
225 |
attgttgcatagtgaaatacaagcatttttattaacnnnnnnnntgtgaatattcttgtttcatcaattatgatagataatattcttgaaatcttagctg |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27887850 |
attgttgcatagtgaaatacaagcatttttattaacaaaaaaa-tatgaatattcttgtttcatcaattatgatagataatattcttgaaatcttagctg |
27887752 |
T |
|
| Q |
325 |
aaaattaacattcttcttgagcaagtgttctcaatcctgagttcaaaaagccaacaagttctatgatttcgttttgatcaattagcttgcaccttctttt |
424 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||| |||| ||||||| | ||||||||||||||||| |||||||||||||||| |
|
|
| T |
27887751 |
aaaattaacattcttctcgagcaagtgttctcaatcccaagttcaaaaatccaaatagttctacggtttcgttttgatcaattcgcttgcaccttctttt |
27887652 |
T |
|
| Q |
425 |
gttttcattcttccaa |
440 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
27887651 |
gttttcattcttccaa |
27887636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 126 - 440
Target Start/End: Complemental strand, 27946608 - 27946294
Alignment:
| Q |
126 |
ttggatgcttttgctataaataggtatcca-ctattgtatttccaacttgaatgaataagaaatcgttttccccttacatatttgggatgtccaaatatc |
224 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
27946608 |
ttggatacttttgctataaataggtatccaactattgtatttccaacttgaatgaataacaaatcgttttccgtttacatatttgggatgtccaactatc |
27946509 |
T |
|
| Q |
225 |
attgttgcatagtgaaatacaagcatttttattaacnnnnnnnntgtgaatattcttgtttcatcaattatgatagataatattcttgaaatcttagctg |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27946508 |
attgttgcatagtgaaatacaagcatttttattaacaaaaaaa-tatgaatattcttgtttcatcaattatgatagataatattcttgaaatcttagctg |
27946410 |
T |
|
| Q |
325 |
aaaattaacattcttcttgagcaagtgttctcaatcctgagttcaaaaagccaacaagttctatgatttcgttttgatcaattagcttgcaccttctttt |
424 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||| |||| ||||||| | ||||||||||||||||| |||||||||||||||| |
|
|
| T |
27946409 |
aaaattaacattcttctcgagcaagtgttctcaatcccaagttcaaaaatccaaatagttctacggtttcgttttgatcaattcgcttgcaccttctttt |
27946310 |
T |
|
| Q |
425 |
gttttcattcttccaa |
440 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
27946309 |
gttttcattcttccaa |
27946294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 126 - 440
Target Start/End: Complemental strand, 28026851 - 28026537
Alignment:
| Q |
126 |
ttggatgcttttgctataaataggtatcca-ctattgtatttccaacttgaatgaataagaaatcgttttccccttacatatttgggatgtccaaatatc |
224 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
28026851 |
ttggatacttttgctataaataggtatccaactattgtatttccaacttgaatgaataacaaatcgttttccgtttacatatttgggatgtccaactatc |
28026752 |
T |
|
| Q |
225 |
attgttgcatagtgaaatacaagcatttttattaacnnnnnnnntgtgaatattcttgtttcatcaattatgatagataatattcttgaaatcttagctg |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28026751 |
attgttgcatagtgaaatacaagcatttttattaacaaaaaaa-tatgaatattcttgtttcatcaattatgatagataatattcttgaaatcttagctg |
28026653 |
T |
|
| Q |
325 |
aaaattaacattcttcttgagcaagtgttctcaatcctgagttcaaaaagccaacaagttctatgatttcgttttgatcaattagcttgcaccttctttt |
424 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||| |||| ||||||| | ||||||||||||||||| |||||||||||||||| |
|
|
| T |
28026652 |
aaaattaacattcttctcgagcaagtgttctcaatcccaagttcaaaaatccaaatagttctacggtttcgttttgatcaattcgcttgcaccttctttt |
28026553 |
T |
|
| Q |
425 |
gttttcattcttccaa |
440 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28026552 |
gttttcattcttccaa |
28026537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 16866695 - 16866753
Alignment:
| Q |
94 |
cagttacttgtaaagcaagctaacttagttacttggatgcttttgctataaataggtat |
152 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
16866695 |
cagtaacttgtaatgcaagctaacttagttacttggatacttttactataaataggtat |
16866753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 7431928 - 7431872
Alignment:
| Q |
99 |
acttgtaaagcaagctaacttagttacttggatgcttttgctataaataggtatcca |
155 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
7431928 |
acttgtaatgcaagctagcttagttacttggatacttttactataaataggtatcca |
7431872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 16862447 - 16862508
Alignment:
| Q |
94 |
cagttacttgtaaagcaagctaacttagttacttggatgcttttgctataaataggtatcca |
155 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
16862447 |
cagtaacttgtaatacaagctagcttagttacttggatacttttactataaataggtatcca |
16862508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 5145779 - 5145746
Alignment:
| Q |
95 |
agttacttgtaaagcaagctaacttagttacttg |
128 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
5145779 |
agttacttgtaaagcaagctagcttagttacttg |
5145746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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