View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8045_low_16 (Length: 456)
Name: NF8045_low_16
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8045_low_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 11 - 456
Target Start/End: Original strand, 8239335 - 8239780
Alignment:
| Q |
11 |
ataatatacaatattttttacccagtttgcttactaaacccttttttgacattgctttcctaaacccttaagaatatgttaacaaggtgtgaatattagg |
110 |
Q |
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| T |
8239335 |
ataatatacaatattttttacccagtttgcttactaaacccttttttgacattgctttcctaaacccttaagaatatgttaacaaggtgtgaatgttagg |
8239434 |
T |
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| Q |
111 |
tgatgaaattgtcattagtacgtatacatcgactaataagaggcaaagtttcataagtttgagtttcttagctcctctacatcacataaccttacgcatc |
210 |
Q |
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| T |
8239435 |
tgatgaaattgtcattagtacgtatacatcgactaataagaggcaaagtttcataagtttgagtttcttagctcctctacatcacataaccttacgcatc |
8239534 |
T |
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| Q |
211 |
cacccaactctatgactatgtaaggtgatgttagtttatttaactgtaattgacaaggctttgagtgtaacaatagtgcaagaatgaaaaagccagtata |
310 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8239535 |
cacccaactctatgactatgtaaggtgatgttagtgtatttaactgtaattgacaaggctttgagtgtaacaatagtgcaagaatgaaaaagccagtata |
8239634 |
T |
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| Q |
311 |
ctttatcaaaaaaggtgtttacggatttgataagcattgccatataattaaaaagatagtgtaccctcatagcgtcacaatagagcaacaactatggaag |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8239635 |
ctttatcaaaaaaggtgtttacggatttgataagcattgccatataattaaaaagatagtgtaccctcatagcgtcacaatagagcaccaactatggaag |
8239734 |
T |
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| Q |
411 |
aattcagattcattgtactcgggatttttccacattcacgttgctt |
456 |
Q |
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| T |
8239735 |
aattcagattcattgtactcgggattttttcacattcacgttgctt |
8239780 |
T |
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