View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8045_low_17 (Length: 455)
Name: NF8045_low_17
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8045_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 9e-68; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 37290734 - 37290919
Alignment:
| Q |
13 |
gagatgaagatctataatacgtacaataataatagatttaaaacgaatattcttttgtttttaaggataacccaataataatataatattgagaatacat |
112 |
Q |
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| T |
37290734 |
gagatgaagatctataatacgtacaataataatagatttaaaacgaatattcttttgtttttaaggataacccaataataatataatattgagaatgcat |
37290833 |
T |
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| Q |
113 |
cctgattagtttaataatatttatttgattgatnnnnnnnnnnnntattcacttaacgttagtgcccatataacaaataagatagtta |
200 |
Q |
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| T |
37290834 |
cctgattagtttaataatatttatttgattgat--aaaaaaaaaatattcatttaacattagtgcccatataacaaataacatagtta |
37290919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 37291171 - 37291237
Alignment:
| Q |
309 |
aactatgtttgtaaccaaaaatattgtgtataacaaagttacaatgatattattacattataacaat |
375 |
Q |
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| T |
37291171 |
aactatgtttgtaaccaaaaatattgtgtataacaaagttacaatgatgttattacattataacaat |
37291237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 37294022 - 37294077
Alignment:
| Q |
382 |
attaaaaaattatcataacaaacatggttgtttagaactttataaaggaaatacgt |
437 |
Q |
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| T |
37294022 |
attaaaaaattattataacagacatggttgtttagaactttataaaggaaatacgt |
37294077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 37291061 - 37291096
Alignment:
| Q |
184 |
aacaaataagatagttacaataatgttttctttcaa |
219 |
Q |
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| T |
37291061 |
aacaaataacatagttacaataatgttttctttcaa |
37291096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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