View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8045_low_18 (Length: 437)
Name: NF8045_low_18
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8045_low_18 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 16 - 437
Target Start/End: Original strand, 44837493 - 44837906
Alignment:
| Q |
16 |
atgacggtagtgggaaaggacaaagttgactttttcatgtccaaaataaacaacatcctttgcaaattggaatcaaccaaacttcattcctaatcatcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44837493 |
atgacggtagtgggaaaggacaaagttgactttttcatgtccaaaataaacaacatcctttgcaaattggaatcaaccaaacttcattcctaatcatcaa |
44837592 |
T |
|
| Q |
116 |
atttctaaattgccatttttctcatcctataaataccctaagtacaagaaatcattcacaacataccaaactagaaagaaacactttcacaaaatcacaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
44837593 |
atttctaaattgccatttttctcatcctataaataccctaagtacaagaaatcattcacaacataccaaactagaaacaaacactttcac--------aa |
44837684 |
T |
|
| Q |
216 |
agatggcaaaaaactctcacacctttttgtctcttattcttctattcctcactctagttgcaacttcccatgctggtggcatagcaatctattggggcca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44837685 |
agatggcaaaaaactctcacacctttttgtctcttattcttctattcctcactctagttgcaacttcccatgctggtggcatagcaatctattggggcca |
44837784 |
T |
|
| Q |
316 |
aaatggcaacgagggaaccttatccgaagcatgcgcaaccggaaaatactcccatgttaacatagctttcctaaacaaattcggtaacggtcaaacccct |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44837785 |
aaatggcaacgagggaaccttatccgaagcatgcgcaaccggaaaatactcccatgttaacatagctttcctaaacaaattcggtaacggtcaaacccct |
44837884 |
T |
|
| Q |
416 |
gaaatgaatctcgcaggtcatt |
437 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
44837885 |
gaaatgaatctcgcaggtcatt |
44837906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 44848775 - 44848880
Alignment:
| Q |
210 |
tcacaaagatggcaaaaaactctcacacctttttgtctcttattcttctattcctcactctagttgcaacttcccatgctggtggcatagcaatctattg |
309 |
Q |
| |
|
|||||||||||||||| || ||||| ||||| ||| ||| ||||| ||||||||||| ||| ||| ||| |||||||||||||||| ||||| || |
|
|
| T |
44848775 |
tcacaaagatggcaaagaattctcatacctt---gtcactttttctt---ttcctcactcttgttagaacctcctatgctggtggcatagccatctactg |
44848868 |
T |
|
| Q |
310 |
gggccaaaatgg |
321 |
Q |
| |
|
|||||||||||| |
|
|
| T |
44848869 |
gggccaaaatgg |
44848880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University