View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8045_low_19 (Length: 436)

Name: NF8045_low_19
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8045_low_19
NF8045_low_19
[»] chr6 (13 HSPs)
chr6 (13-419)||(6585285-6585691)
chr6 (283-413)||(6603256-6603386)
chr6 (285-416)||(6402777-6402908)
chr6 (285-416)||(7119074-7119205)
chr6 (285-416)||(7131552-7131683)
chr6 (283-413)||(6432076-6432206)
chr6 (287-419)||(19632358-19632490)
chr6 (289-419)||(10579784-10579915)
chr6 (275-419)||(6415873-6416017)
chr6 (285-403)||(6423134-6423252)
chr6 (287-404)||(7994245-7994362)
chr6 (340-408)||(6586169-6586237)
chr6 (374-419)||(14802342-14802387)
[»] chr3 (4 HSPs)
chr3 (289-419)||(51113829-51113959)
chr3 (280-419)||(51764488-51764627)
chr3 (275-419)||(13470780-13470924)
chr3 (285-407)||(514788-514910)
[»] chr2 (2 HSPs)
chr2 (289-419)||(45245133-45245263)
chr2 (289-413)||(1037718-1037842)
[»] chr1 (2 HSPs)
chr1 (275-419)||(19468547-19468691)
chr1 (302-413)||(7554422-7554533)
[»] chr4 (12 HSPs)
chr4 (289-408)||(546834-546953)
chr4 (287-400)||(8184097-8184210)
chr4 (285-419)||(1513455-1513586)
chr4 (312-408)||(1548483-1548579)
chr4 (290-394)||(370842-370946)
chr4 (289-393)||(53761844-53761947)
chr4 (289-413)||(55908782-55908906)
chr4 (138-181)||(51169285-51169328)
chr4 (358-408)||(558488-558538)
chr4 (302-419)||(640849-640966)
chr4 (381-413)||(566202-566234)
chr4 (285-337)||(21834436-21834488)
[»] chr7 (3 HSPs)
chr7 (285-419)||(15092199-15092333)
chr7 (286-403)||(10170145-10170262)
chr7 (286-403)||(10177670-10177787)
[»] chr5 (1 HSPs)
chr5 (270-419)||(20478130-20478279)
[»] chr8 (3 HSPs)
chr8 (283-419)||(27922423-27922559)
chr8 (358-408)||(32151291-32151341)
chr8 (375-419)||(18315321-18315365)
[»] scaffold0807 (1 HSPs)
scaffold0807 (357-408)||(1526-1577)
[»] scaffold0041 (1 HSPs)
scaffold0041 (375-419)||(39191-39235)


Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 13 - 419
Target Start/End: Complemental strand, 6585691 - 6585285
Alignment:
Q  13 aaaatcccccgttgaactgaaatatgtgaaacatttgacacataagaactcatcagaagcaccggaacataaagttgaatttctgagagtagatacttga 112  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6585691 aaaatcccccgttgaactgaaatctgtgaaacatttgacacataagaactcatcagatgcaccggaacataaagttgaatttctgagagtagatacttga 6585592  T
Q  113 gtagaatctctcttctggtgattaccgtctgaacttccagcatcaagtccttcactgttttcatgaatacatgtgtaatttagatatttatataaggact 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6585591 gtagaatctctcttctggtgattaccgtctgaacttccagcatcaagtccttcaccgttttcatgaatacatgtgtaatttagatatttatataaggact 6585492  T
Q  213 gaaaagagagtcaatacacactcttaagtacaagacatactcaatttacatatacagaaggcatccatgttttctcagttgtgtgcaaatttctaccaca 312  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6585491 gaaaagagagtcaatactcactcttaagtacaagacatactcaatttacatatacagaaggcatccatgttttctcagttgtgtgcaaatttctaccaca 6585392  T
Q  313 tgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatcaccaa 412  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6585391 tgtttcagtcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatcatcaa 6585292  T
Q  413 cctttgt 419  Q
    |||||||    
T  6585291 cctttgt 6585285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 283 - 413
Target Start/End: Complemental strand, 6603386 - 6603256
Alignment:
Q  283 tttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactct 382  Q
    |||||||||||| ||||  |||||||||||||||||| ||| |||| ||||||||  | ||||  ||||| |||||||||||||||| ||| ||||||||    
T  6603386 tttctcagttgtttgcagttttctaccacatgtttcactcctttctctgtgacataataacaatatttcaataatagttccaaaagcccaggacaactct 6603287  T
Q  383 ttgagatcacatagagtgtttcatcaccaac 413  Q
    |||||||| |||||| |||||||||| ||||    
T  6603286 ttgagatcgcatagactgtttcatcatcaac 6603256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 285 - 416
Target Start/End: Original strand, 6402777 - 6402908
Alignment:
Q  285 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 384  Q
    |||||||||||| ||  |||||| ||||||||||  |||||| | ||||||||| | |||| || ||| |||||||| ||||||| ||  |||| |||||    
T  6402777 tctcagttgtgtacagttttctatcacatgtttcgctcccttttctgtgacattataacaatctctcaataatagtttcaaaagcccactacaattcttt 6402876  T
Q  385 gagatcacatagagtgtttcatcaccaacctt 416  Q
    |||||||||||||||||||||||| |||||||    
T  6402877 gagatcacatagagtgtttcatcatcaacctt 6402908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 285 - 416
Target Start/End: Original strand, 7119074 - 7119205
Alignment:
Q  285 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 384  Q
    ||||| |||||||||  ||||| |||||||||||| | | || | ||||||||  | |||| ||||||||||||||||||||||| |  ||||| ||||     
T  7119074 tctcaattgtgtgcagttttcttccacatgtttcacttctttttttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 7119173  T
Q  385 gagatcacatagagtgtttcatcaccaacctt 416  Q
    |||||||||| ||||||||||||| |||||||    
T  7119174 gagatcacatggagtgtttcatcatcaacctt 7119205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 285 - 416
Target Start/End: Original strand, 7131552 - 7131683
Alignment:
Q  285 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 384  Q
    ||||| |||||||||  ||||| |||||||||||| | | || | ||||||||  | |||| ||||||||||||||||||||||| |  ||||| ||||     
T  7131552 tctcaattgtgtgcagttttcttccacatgtttcactgctttgtttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 7131651  T
Q  385 gagatcacatagagtgtttcatcaccaacctt 416  Q
    |||||||||| ||||||||||||| |||||||    
T  7131652 gagatcacatggagtgtttcatcatcaacctt 7131683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 283 - 413
Target Start/End: Original strand, 6432076 - 6432206
Alignment:
Q  283 tttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactct 382  Q
    ||||||| |||||||||  ||||||||||| |||||| |||||||| ||||||||| ||||||   | ||| ||||||| || |||| || ||||| |||    
T  6432076 tttctcaattgtgtgcatttttctaccacaagtttcactcccttctgtgtgacattatcacaattgtacaggaatagttgcagaagcccacaacaattct 6432175  T
Q  383 ttgagatcacatagagtgtttcatcaccaac 413  Q
    || |||||||||| |||||||||||| ||||    
T  6432176 ttaagatcacataaagtgtttcatcatcaac 6432206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 419
Target Start/End: Original strand, 19632358 - 19632490
Alignment:
Q  287 tcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttga 386  Q
    |||||||| ||||  |||||||||| ||||||| |||||||| ||||| |||  |||||  ||||||||| |||| ||||||| || ||||| |||||||    
T  19632358 tcagttgtttgcagttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttga 19632457  T
Q  387 gatcacatagagtgtttcatcaccaacctttgt 419  Q
    ||||||| | |||   |||||| ||||||||||    
T  19632458 gatcacaaaaagttgctcatcatcaacctttgt 19632490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 289 - 419
Target Start/End: Complemental strand, 10579915 - 10579784
Alignment:
Q  289 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaa-tagttccaaaagcgcagaacaactctttgag 387  Q
    |||||||||||  |||||||||||||||| | |||||||| ||||||  ||| |||   ||||||||| |||||||||||||  | ||||| ||||||||    
T  10579915 agttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaaatagttccaaaagccgacaacaattctttgag 10579816  T
Q  388 atcacatagagtgtttcatcaccaacctttgt 419  Q
    |||  ||||||||||| |||| |||| |||||    
T  10579815 atcgaatagagtgttttatcatcaacttttgt 10579784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 419
Target Start/End: Original strand, 6415873 - 6416017
Alignment:
Q  275 atccatgttttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcaga 374  Q
    ||||||| | ||| |||||||||||  | |||||||||||||||| ||||   | ||||||||| ||||||  ||  |||||||||| ||||||| |       
T  6415873 atccatgctctcttagttgtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgct 6415972  T
Q  375 acaactctttgagatcacatagagtgtttcatcaccaacctttgt 419  Q
    |||| ||||||||||||||||||| |||| ||||  |||||||||    
T  6415973 acaattctttgagatcacatagagagttttatcattaacctttgt 6416017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 285 - 403
Target Start/End: Original strand, 6423134 - 6423252
Alignment:
Q  285 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 384  Q
    ||||| |||||||||  ||  ||||||| |||||||||| || | ||| ||||  |||||| |||  |||||||||| ||||| | || |||||||||||    
T  6423134 tctcaattgtgtgcagtttaataccacacgtttcagtcctttgtttgttacataatcacaatcttcaagtaatagttgcaaaatcccacaacaactcttt 6423233  T
Q  385 gagatcacatagagtgttt 403  Q
    |||||| ||||||||||||    
T  6423234 gagatcgcatagagtgttt 6423252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 404
Target Start/End: Complemental strand, 7994362 - 7994245
Alignment:
Q  287 tcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttga 386  Q
    ||||||| |||||  |||||||||||||||||| ||||| ||  || ||||  | ||||  ||  |||||||||| ||||||  |||||||| |||||||    
T  7994362 tcagttgcgtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaaagtccagaacaattctttga 7994263  T
Q  387 gatcacatagagtgtttc 404  Q
    ||||||||| ||||||||    
T  7994262 gatcacatatagtgtttc 7994245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 408
Target Start/End: Complemental strand, 6586237 - 6586169
Alignment:
Q  340 tcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatca 408  Q
    ||||||||| ||||| ||||||||||||||  || |||| ||||||||||| || ||||||||||||||    
T  6586237 tcacaacctatcagtgatagttccaaaagcctaggacaaatctttgagatcgcacagagtgtttcatca 6586169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 419
Target Start/End: Original strand, 14802342 - 14802387
Alignment:
Q  374 aacaactctttgagatcacatagagtgtttcatcaccaacctttgt 419  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  14802342 aacaattctttgaaatcacatagagtgtttcatcatcaacctttgt 14802387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 289 - 419
Target Start/End: Complemental strand, 51113959 - 51113829
Alignment:
Q  289 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 388  Q
    |||| ||||||  ||||||||||||| |||| |||||||| ||||||||  | ||||  ||||||||| |||| ||||||| || |||||||||| ||||    
T  51113959 agttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactcttcgaga 51113860  T
Q  389 tcacatagagtgtttcatcaccaacctttgt 419  Q
    |||||||||||||||||||| ||||| ||||    
T  51113859 tcacatagagtgtttcatcatcaaccattgt 51113829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 280 - 419
Target Start/End: Complemental strand, 51764627 - 51764488
Alignment:
Q  280 tgttttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaac 379  Q
    |||| ||||| |||||||||  |||| ||||||||||||| ||||||||   ||||||| ||||||  || ||||||||||| ||||||| |  |||||     
T  51764627 tgttctctcaattgtgtgcagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaat 51764528  T
Q  380 tctttgagatcacatagagtgtttcatcaccaacctttgt 419  Q
    ||||||||||| |||||||||||| |||| |||| |||||    
T  51764527 tctttgagatcgcatagagtgttttatcatcaacttttgt 51764488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 419
Target Start/End: Complemental strand, 13470924 - 13470780
Alignment:
Q  275 atccatgttttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcaga 374  Q
    ||||||| | ||| || ||||||||  | |||||||||||||||| |||||  | ||||||||| | ||||  ||  |||||||||| ||||||| || |    
T  13470924 atccatgctctcttagctgtgtgcagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccaca 13470825  T
Q  375 acaactctttgagatcacatagagtgtttcatcaccaacctttgt 419  Q
    |||| |||||||||||| ||||||||||| ||||  |||||||||    
T  13470824 acaattctttgagatcatatagagtgttttatcattaacctttgt 13470780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 407
Target Start/End: Complemental strand, 514910 - 514788
Alignment:
Q  285 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 384  Q
    ||||||| |||||||  |||  |||||||| |||| |||| ||| ||||| |  |||||||  || ||||||||||| ||||||| || | ||||||||     
T  514910 tctcagtcgtgtgcagtttttcaccacatgcttcactcccgtctctgtgataccttcacaattttgcagtaatagttgcaaaagcccacagcaactcttc 514811  T
Q  385 gagatcacatagagtgtttcatc 407  Q
    ||||||||||  |||| ||||||    
T  514810 gagatcacatgaagtgcttcatc 514788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 289 - 419
Target Start/End: Complemental strand, 45245263 - 45245133
Alignment:
Q  289 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 388  Q
    |||||||||||| |||||||||||||||||| |||||| | ||||||||  | |||   ||||| |||||||| ||||||| ||  ||||||||||||||    
T  45245263 agttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgaga 45245164  T
Q  389 tcacatagagtgtttcatcaccaacctttgt 419  Q
    |||||| ||||||||||||| ||||| ||||    
T  45245163 tcacatggagtgtttcatcatcaaccattgt 45245133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 413
Target Start/End: Complemental strand, 1037842 - 1037718
Alignment:
Q  289 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 388  Q
    |||||||||||  |||| || ||||||||||  || |||| |||||| |  ||||||  || ||| || ||||  |||||| || ||||| |||||||||    
T  1037842 agttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgaga 1037743  T
Q  389 tcacatagagtgtttcatcaccaac 413  Q
    ||| |||||||||||||||| ||||    
T  1037742 tcatatagagtgtttcatcatcaac 1037718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 275 - 419
Target Start/End: Complemental strand, 19468691 - 19468547
Alignment:
Q  275 atccatgttttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcaga 374  Q
    ||||||||| ||||||||||| |||| |||||  ||||||||||| ||| |||| ||||||||  | |||||| | ||  |||| |||||||||  || |    
T  19468691 atccatgttctctcagttgtgagcaattttctttcacatgtttcactcctttctctgtgacatcattacaaccgtccacaaataattccaaaagtccaca 19468592  T
Q  375 acaactctttgagatcacatagagtgtttcatcaccaacctttgt 419  Q
    |||  |||||||||||||||| |||||||||||| ||||||||||    
T  19468591 acagttctttgagatcacataaagtgtttcatcatcaacctttgt 19468547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 413
Target Start/End: Original strand, 7554422 - 7554533
Alignment:
Q  302 tttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgt 401  Q
    ||||||||||||| |||| |||||| | ||||||||| ||||| ||||||||||| ||||  |||||  ||  ||||||||||||||||| ||||||||     
T  7554422 tttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtccaccacaactctttgagatcatatagagtgc 7554521  T
Q  402 ttcatcaccaac 413  Q
    ||||||| ||||    
T  7554522 ttcatcatcaac 7554533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 546834 - 546953
Alignment:
Q  289 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 388  Q
    |||| ||||||  |||||| ||||||||||| |||||||| ||||||||    |||  ||| |||||| | |||||||||| || |||||||||||||||    
T  546834 agttttgtgcagttttctagcacatgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccacaacaactctttgaga 546933  T
Q  389 tcacatagagtgtttcatca 408  Q
    ||||||||||||||||||||    
T  546934 tcacatagagtgtttcatca 546953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 400
Target Start/End: Complemental strand, 8184210 - 8184097
Alignment:
Q  287 tcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttga 386  Q
    |||||||||||||| |||||| |||||| |||| |||||  | |||||   ||||||||  || |||||| |||||||||||| || |||||||||||||    
T  8184210 tcagttgtgtgcaattttctagcacatgcttcactccctcatctgtgatcatttcacaattttccagtaacagttccaaaagcccacaacaactctttga 8184111  T
Q  387 gatcacatagagtg 400  Q
    |||  |||||||||    
T  8184110 gattgcatagagtg 8184097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 419
Target Start/End: Complemental strand, 1513586 - 1513455
Alignment:
Q  285 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 384  Q
    |||||||||||||||  |||||| |||| | |||| |||| ||| ||||||| |   ||||||||||||||  |||| ||||||| ||  ||||| ||||    
T  1513586 tctcagttgtgtgcatttttctagcacaagcttcactcccatctctgtgacaat---acaacctttcagtatgagttgcaaaagcccacgacaacacttt 1513490  T
Q  385 gagatcacatagagtgtttcatcaccaacctttgt 419  Q
    ||||| || ||||||||||||||| |||| |||||    
T  1513489 gagattacgtagagtgtttcatcatcaacatttgt 1513455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 312 - 408
Target Start/End: Complemental strand, 1548579 - 1548483
Alignment:
Q  312 atgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatca 408  Q
    |||||||| |||||||| ||||| ||||| ||||| |||  |||| |  | ||||||| || ||||||||||||||||||||| |||||||||||||    
T  1548579 atgtttcactcccttctctgtgatatttttacaacgtttttgtaacaagtgcaaaagcccacaacaactctttgagatcacattgagtgtttcatca 1548483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 394
Target Start/End: Original strand, 370842 - 370946
Alignment:
Q  290 gttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagat 389  Q
    ||||||||||  |||  |||||||| |||| |||| ||| ||||| |  |||||||  || ||||||||||| |||||||  | ||||||||||||||||    
T  370842 gttgtgtgcagtttttcaccacatgcttcactcccatctttgtgataccttcacaattttgcagtaatagttgcaaaagccgacaacaactctttgagat 370941  T
Q  390 cacat 394  Q
    |||||    
T  370942 cacat 370946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 393
Target Start/End: Complemental strand, 53761947 - 53761844
Alignment:
Q  289 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 388  Q
    |||||||||||  ||||| |||||||||||| |||||| |  |||||||| ||||||  ||||||||||| || ||||||| ||  |||| |||| ||||    
T  53761947 agttgtgtgcagttttcttccacatgtttcactcccttgtccgtgacattatcacaatgtttcagtaata-ttgcaaaagcccacgacaattcttcgaga 53761849  T
Q  389 tcaca 393  Q
    |||||    
T  53761848 tcaca 53761844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 413
Target Start/End: Complemental strand, 55908906 - 55908782
Alignment:
Q  289 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 388  Q
    |||||||||||  |||| || ||||||||||  || |||| |||||| |  ||||||  || ||| || ||||  |||||| || ||||| |||||||||    
T  55908906 agttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgaga 55908807  T
Q  389 tcacatagagtgtttcatcaccaac 413  Q
    ||| |||||||||||||||| ||||    
T  55908806 tcatatagagtgtttcatcatcaac 55908782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 51169285 - 51169328
Alignment:
Q  138 cgtctgaacttccagcatcaagtccttcactgttttcatgaata 181  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||    
T  51169285 cgtctgaacttccagcatcaagtcctctactgtttgcatgaata 51169328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 408
Target Start/End: Original strand, 558488 - 558538
Alignment:
Q  358 agttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatca 408  Q
    |||||||||||| ||  |||||||||||||||||||| ||||| |||||||    
T  558488 agttccaaaagcccacgacaactctttgagatcacatggagtgcttcatca 558538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 419
Target Start/End: Original strand, 640849 - 640966
Alignment:
Q  302 tttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgt 401  Q
    ||||||||||||| |||| |||||||| ||| ||||  | |||| ||| |||||| || | ||||||  ||   ||| |||||||| |||| ||||||||    
T  640849 tttctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattctttgaggtcacgtagagtgt 640948  T
Q  402 ttcatcaccaacctttgt 419  Q
    ||||||| |||| |||||    
T  640949 ttcatcatcaacgtttgt 640966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 413
Target Start/End: Original strand, 566202 - 566234
Alignment:
Q  381 ctttgagatcacatagagtgtttcatcaccaac 413  Q
    |||||||||||||||||||||||||||| ||||    
T  566202 ctttgagatcacatagagtgtttcatcatcaac 566234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 337
Target Start/End: Complemental strand, 21834488 - 21834436
Alignment:
Q  285 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacat 337  Q
    |||||||||||| ||  ||||||||| |||||||| |||||||| ||||||||    
T  21834488 tctcagttgtgtacatctttctaccatatgtttcattcccttctctgtgacat 21834436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 419
Target Start/End: Complemental strand, 15092333 - 15092199
Alignment:
Q  285 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 384  Q
    ||||| |||||||||  |||||| ||||||||||| ||||   | ||||||||| | ||||  ||  |||||||||| ||||||| || ||||| |||||    
T  15092333 tctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacattataacaaaattcaagtaatagttgcaaaagcccacaacaattcttt 15092234  T
Q  385 gagatcacatagagtgtttcatcaccaacctttgt 419  Q
    |||||| |||||||||||| ||||  |||||||||    
T  15092233 gagatcgcatagagtgttttatcattaacctttgt 15092199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 403
Target Start/End: Complemental strand, 10170262 - 10170145
Alignment:
Q  286 ctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttg 385  Q
    |||||||||| |||  |||||  ||||||||||| ||| |||| ||||||||  | ||||   ||||  ||||||| ||||||  || |||||  |||||    
T  10170262 ctcagttgtgagcagttttctttcacatgtttcactcctttctctgtgacatcattacaattgttcacaaatagtttcaaaagtccacaacaatactttg 10170163  T
Q  386 agatcacatagagtgttt 403  Q
    ||||||||||||||||||    
T  10170162 agatcacatagagtgttt 10170145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 403
Target Start/End: Complemental strand, 10177787 - 10177670
Alignment:
Q  286 ctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttg 385  Q
    |||||||||| |||  |||||  ||||||||||| ||| |||| ||||||||  | ||||   ||||  ||||||| ||||||  || |||||  |||||    
T  10177787 ctcagttgtgagcagttttctttcacatgtttcactcctttctctgtgacatcattacaattgttcacaaatagtttcaaaagtccacaacaatactttg 10177688  T
Q  386 agatcacatagagtgttt 403  Q
    ||||||||||||||||||    
T  10177687 agatcacatagagtgttt 10177670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 419
Target Start/End: Complemental strand, 20478279 - 20478130
Alignment:
Q  270 aaggcatccatgttttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagc 369  Q
    |||||||||||| | |||||||||||||||  ||||||| |||||||||  ||| |||  ||||||||| || |||  |||||||| || || |||||||    
T  20478279 aaggcatccatgctctctcagttgtgtgcagttttctacgacatgtttcgctcctttcattgtgacattatcgcaatttttcagtagtatttgcaaaagc 20478180  T
Q  370 gcagaacaactctttgagatcacatagagtgtttcatcaccaacctttgt 419  Q
     || ||||| || ||||||||||| | | |||||| ||| |||| |||||    
T  20478179 ccacaacaattccttgagatcacagataatgtttcgtcatcaacatttgt 20478130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 419
Target Start/End: Original strand, 27922423 - 27922559
Alignment:
Q  283 tttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactct 382  Q
    ||||||||||| |||||  ||||||||||||| |||| |||||||| ||||| ||  | ||||  ||  ||| | | || ||||||| || |||||||||    
T  27922423 tttctcagttgagtgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttcaaaagcccacaacaactct 27922522  T
Q  383 ttgagatcacatagagtgtttcatcaccaacctttgt 419  Q
    ||||||||| ||| |||| ||||||| |||| |||||    
T  27922523 ttgagatcatataaagtgcttcatcatcaacatttgt 27922559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 408
Target Start/End: Original strand, 32151291 - 32151341
Alignment:
Q  358 agttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatca 408  Q
    |||| ||||||| ||  ||||||||||||||||||||||||||||||||||    
T  32151291 agttgcaaaagcccactacaactctttgagatcacatagagtgtttcatca 32151341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 375 - 419
Target Start/End: Complemental strand, 18315365 - 18315321
Alignment:
Q  375 acaactctttgagatcacatagagtgtttcatcaccaacctttgt 419  Q
    |||||||||||||||||||||||||| ||||||| |||| |||||    
T  18315365 acaactctttgagatcacatagagtgcttcatcatcaacttttgt 18315321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 408
Target Start/End: Complemental strand, 1577 - 1526
Alignment:
Q  357 tagttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatca 408  Q
    ||||||||||| | | |||||| |||||||||||||||||||||||||||||    
T  1577 tagttccaaaatccctgaacaattctttgagatcacatagagtgtttcatca 1526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 39191 - 39235
Alignment:
Q  375 acaactctttgagatcacatagagtgtttcatcaccaacctttgt 419  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||    
T  39191 acaactctttgagatcacataaagtgtttcatcattaacctttgt 39235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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