View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8045_low_2 (Length: 733)
Name: NF8045_low_2
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8045_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 620; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 1 - 716
Target Start/End: Original strand, 52715931 - 52716664
Alignment:
| Q |
1 |
accctcttctgtctacatttgaacttccattttttattataaactttataaatctcatttaattataaacatag--gtgtcaccctctataagagaagac |
98 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52715931 |
accctcttctgtctacatttgaacttccattttttattataaactttataaatctcatttaattataaacatagaggtgtcaccctctataagagaagac |
52716030 |
T |
|
| Q |
99 |
ttaacaatacagaatcaaacctttct---cagccatgtttccttcttaaataaa-tttatacacaaactctcnnnnnnnnn-gtcaccctagctataaca |
193 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
52716031 |
ttaacaatacagaattaaacctttcttctcagccatgtttccttcttaaataaaatttatacacaaactctctcttttttttgtcaccctagctataaca |
52716130 |
T |
|
| Q |
194 |
atttc-----------aatctaatctatcttgacctatctataaccatgattaccggtaaggatatatacgatgttttcgcagcaattgtgccgctatat |
282 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52716131 |
atttctttgtgtgtctaatctaatctaccttgacctatctataaccatgattaccggtaaggatatatacgatgttttcgcagcaattgtgccgctatat |
52716230 |
T |
|
| Q |
283 |
gttgctatgatattagcatacggttcagttcgttggtggaaaatcttcacaccagatcaatgttctggtataaaccgttttgtcgctgttttcgcagttc |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52716231 |
gttgctatgatattagcatacggttcagttcgttggtggaaaatcttcacaccagatcaatgttctggtataaaccgttttgtcgctgttttcgcagttc |
52716330 |
T |
|
| Q |
383 |
cattactatctttccattttatatcttccaatgatccttatgctatgaattaccatttcttagcagctgattcacttcaaaaagtagttatccttggtgc |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52716331 |
cattactatctttccattttatatcttccaatgatccttatgctatgaattaccatttcttagcagctgattcacttcaaaaagtagttatccttggtgc |
52716430 |
T |
|
| Q |
483 |
tctttttatatggaacacattctcaaaaaaccaagatagtcttgattggactattacacttttctccctttcaactcttcctaacacacttgttatggga |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52716431 |
tctttttatatggaacacattctcaaaaaaccaagatagtcttgattggactattacacttttctccctttcaactcttcctaacacacttgttatggga |
52716530 |
T |
|
| Q |
583 |
atccctcttttaagagctatgtatggtgatttctcaggaaatcttatggtacaaattgttgttcttcaaagtgttatttggtacactcttatgttgtttt |
682 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52716531 |
atccctcttttaagagctatgtatggtgatttctcaggaaatcttatggtacaaattgttgttcttcaaagtgttatttggtacactcttatgttgtttt |
52716630 |
T |
|
| Q |
683 |
tgtttgaatatagagctgctaaacttcttataac |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
52716631 |
tgtttgaatatagagctgctaaacttcttataac |
52716664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 201 - 713
Target Start/End: Original strand, 52710841 - 52711353
Alignment:
| Q |
201 |
tctaatctatcttgacctatctataaccatgattaccggtaaggatatatacgatgttttcgcagcaattgtgccgctatatgttgctatgatattagca |
300 |
Q |
| |
|
||||| ||| |||||| |||||||||||||||||||||| ||||| |||||| ||||||| || || |||||||| |||||||| ||||||||||||||| |
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|
| T |
52710841 |
tctaacctaccttgacatatctataaccatgattaccggcaaggacatatacaatgttttagcggcgattgtgccactatatgtcgctatgatattagca |
52710940 |
T |
|
| Q |
301 |
tacggttcagttcgttggtggaaaatcttcacaccagatcaatgttctggtataaaccgttttgtcgctgttttcgcagttccattactatctttccatt |
400 |
Q |
| |
|
|| ||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| |||||||| |||||||| ||||||| |
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|
| T |
52710941 |
tatggttcggtccgatggtggaaaatcttcacaccagatcaatgttctggaataaaccgttttgtctcggtttttgcagttccgttactatcattccatt |
52711040 |
T |
|
| Q |
401 |
ttatatcttccaatgatccttatgctatgaattaccatttcttagcagctgattcacttcaaaaagtagttatccttggtgctctttttatatggaacac |
500 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52711041 |
ttatttcatccaatgatccttatgctatgaattaccatttcttagcagccgattcacttcaaaaagtagttatccttggtgctctttttatatggaacac |
52711140 |
T |
|
| Q |
501 |
attctcaaaaaaccaagatagtcttgattggactattacacttttctccctttcaactcttcctaacacacttgttatgggaatccctcttttaagagct |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| ||| |
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|
| T |
52711141 |
attctcaaaaaaccaagatagtcttgattggaccattacacttttctccatttcaactcttcctaacacacttatcatgggaatccctcttttaaaagcc |
52711240 |
T |
|
| Q |
601 |
atgtatggtgatttctcaggaaatcttatggtacaaattgttgttcttcaaagtgttatttggtacactcttatgttgtttttgtttgaatatagagctg |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || || | || ||||||||||||||||||| |
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|
| T |
52711241 |
atgtatggtgatttctcaggaaatcttatggtacaaattgttgttctgcaaagtgttatctggtacacactcattcttttcttgtttgaatatagagctg |
52711340 |
T |
|
| Q |
701 |
ctaaacttcttat |
713 |
Q |
| |
|
||||||||||||| |
|
|
| T |
52711341 |
ctaaacttcttat |
52711353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 316 - 383
Target Start/End: Original strand, 33101981 - 33102048
Alignment:
| Q |
316 |
tggtggaaaatcttcacaccagatcaatgttctggtataaaccgttttgtcgctgttttcgcagttcc |
383 |
Q |
| |
|
||||||||||| ||| |||| || |||||||| || ||||||||||| ||||| ||||||||||||| |
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|
| T |
33101981 |
tggtggaaaatattctcaccggaccaatgttccggcataaaccgtttcgtcgcgattttcgcagttcc |
33102048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 278 - 377
Target Start/End: Complemental strand, 10839139 - 10839040
Alignment:
| Q |
278 |
tatatgttgctatgatattagcatacggttcagttcgttggtggaaaatcttcacaccagatcaatgttctggtataaaccgttttgtcgctgttttcgc |
377 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| || ||||||||||| || ||| |||| ||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
10839139 |
tatatgttgctatgatcttagcctacggttcggtccgttggtggaagattttctcaccggatcaatgttccggtataaaccgttttgtcgcggttttcgc |
10839040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 672
Target Start/End: Complemental strand, 10838867 - 10838748
Alignment:
| Q |
553 |
tcaactcttcctaacacacttgttatgggaatccctcttttaagagctatgtatggtgatttctcaggaaatcttatggtacaaattgttgttcttcaaa |
652 |
Q |
| |
|
||||| ||||||||||| | ||||||||||| ||| | |||| |||||||||||||||| ||||| | | ||||| ||| |||| |||||||| |
|
|
| T |
10838867 |
tcaacacttcctaacactttggttatgggaattcctttgttaattgctatgtatggtgattattcaggtagcttaatggttcaagttgtggttcttcagt |
10838768 |
T |
|
| Q |
653 |
gtgttatttggtacactctt |
672 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
10838767 |
gtattatttggtacactctt |
10838748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 395
Target Start/End: Complemental strand, 9970432 - 9970359
Alignment:
| Q |
322 |
aaaatcttcacaccagatcaatgttctggtataaaccgttttgtcgctgttttcgcagttccattactatcttt |
395 |
Q |
| |
|
||||| ||||| |||||||||||||| || |||||||| || ||||| ||||| || |||||| | |||||||| |
|
|
| T |
9970432 |
aaaatgttcaccccagatcaatgttccggcataaaccgattcgtcgcagtttttgctgttccagttctatcttt |
9970359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 316 - 465
Target Start/End: Original strand, 34970773 - 34970922
Alignment:
| Q |
316 |
tggtggaaaatcttcacaccagatcaatgttctggtataaaccgttttgtcgctgttttcgcagttccattactatctttccattttatatcttccaatg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||| || |||| ||||||||| | || || ||||| || || || |||| |
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|
| T |
34970773 |
tggtggaaaatcttcacaccagatcaatgttcaggcataaaccgttttgtagcactttttgcagttccacttctctcattccacttcatctcaaccaaca |
34970872 |
T |
|
| Q |
416 |
atccttatgctatgaattaccatttcttagcagctgattcacttcaaaaa |
465 |
Q |
| |
|
||||||| ||||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
34970873 |
atccttacactatgaactacaggttcatagcagctgattcacttcaaaaa |
34970922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 533 - 695
Target Start/End: Original strand, 34970987 - 34971149
Alignment:
| Q |
533 |
ctattacacttttctccctttcaactcttcctaacacacttgttatgggaatccctcttttaagagctatgtatggtgatttctcaggaaatcttatggt |
632 |
Q |
| |
|
|||| ||||| ||||| |||||||| ||||||||||||||||||||||| || ||| | || | || |||||||||||| || || | |||||||| |
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|
| T |
34970987 |
ctataacactgttctcactttcaacacttcctaacacacttgttatgggcattcctttgttgaaaggaatgtatggtgatgattctggtacccttatggt |
34971086 |
T |
|
| Q |
633 |
acaaattgttgttcttcaaagtgttatttggtacactcttatgttgtttttgtttgaatatag |
695 |
Q |
| |
|
||||| |||||||||||| || | |||||||| || | ||||||||||||||||| ||||| |
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|
| T |
34971087 |
tcaaatagttgttcttcaatgtatcatttggtatacattgatgttgtttttgtttgagtatag |
34971149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 16761431 - 16761382
Alignment:
| Q |
316 |
tggtggaaaatcttcacaccagatcaatgttctggtataaaccgttttgt |
365 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16761431 |
tggtggaaaatctttacaccagatcaatgtgctggtataaaccgttttgt |
16761382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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