View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8045_low_22 (Length: 429)
Name: NF8045_low_22
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8045_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 2756364 - 2756632
Alignment:
| Q |
1 |
gaccataacatgtaatttcaataccttggcagtacagtatccaatttcttcatctttggacgaatgatcgtgatcgtcacctagaaggcgcctagcagtg |
100 |
Q |
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| T |
2756364 |
gaccataacatgtaatttcaataccttggcagtacagtatccaatttcttcatctttggacgaatgatcgtgatcgtcacctagaaggcgcttagcagtg |
2756463 |
T |
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| Q |
101 |
ccaaaaacatccttggaagagaaaaaagtctgaaaatgtgacttggatggtaattttgtttctttgacttcatcgtccccattaatactacaaggaagca |
200 |
Q |
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| T |
2756464 |
ccaaaaacatccttggaagagaaaaaagtctgaaaatgtgacttggatggtaattttgtttctttgacttcatcgtccccattaatactacaaggaagca |
2756563 |
T |
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| Q |
201 |
tatgaatagtccattctaccggaacacaaatttttatcatcccattttgtgttaccgttagaaacagtg |
269 |
Q |
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| T |
2756564 |
tatgaatagtccattctaccggaacacaaatttttatcatcccattttgtgttaccgttagaaacagtg |
2756632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 365 - 412
Target Start/End: Original strand, 2756728 - 2756775
Alignment:
| Q |
365 |
tatcataattataacaataacaaagaaaacaaggaaaaaccttctttg |
412 |
Q |
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| T |
2756728 |
tatcataattataacagtaacaaagaaaacaaggaaaaaccttctttg |
2756775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 2748493 - 2748560
Alignment:
| Q |
187 |
actacaaggaagcatatgaatagtccattctaccggaacacaaatttttatcatcccattttgtgtta |
254 |
Q |
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| T |
2748493 |
actacaaggaagcatatgataagtccactcatcaggaacacaaatttttgttatcccattttgtgtta |
2748560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 2748393 - 2748456
Alignment:
| Q |
78 |
cacctagaaggcgcctagcagtgccaaaaacatccttggaagagaaaaaagtctgaaaatgtga |
141 |
Q |
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|||| |||||||||| |||||||||| ||||| | |||||||||||||||||||||||||| |
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| T |
2748393 |
caccaagaaggcgccgagcagtgccagaaacaagatccgaagagaaaaaagtctgaaaatgtga |
2748456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 2748316 - 2748357
Alignment:
| Q |
13 |
taatttcaataccttggcagtacagtatccaatttcttcatc |
54 |
Q |
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| T |
2748316 |
taatttcaataccttggcagtgcagtatccaactttttcatc |
2748357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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