View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8045_low_23 (Length: 409)
Name: NF8045_low_23
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8045_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 186 - 350
Target Start/End: Original strand, 31030954 - 31031121
Alignment:
| Q |
186 |
gatatactaacttgtgttcttggcatttacctaaaaagacactaattaatacgacaaatattgagtaatttgttctagttattc-ttttttaaacaatag |
284 |
Q |
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| T |
31030954 |
gatatactaacttgtgttcttggcatttacctaaaaagacactaattaatacgacaaatattgagtaatttgttctagttattctttttttaaacaatag |
31031053 |
T |
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| Q |
285 |
taatttgttttagttggattaagaatataccacaatgaaaa--ttctgtgaatacagtaaaaggagta |
350 |
Q |
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| T |
31031054 |
taatttgttttagttggattaagaatataccacaatgaaaattttctgtgaatacagtaaaaggagta |
31031121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 282 - 344
Target Start/End: Original strand, 31021176 - 31021238
Alignment:
| Q |
282 |
tagtaatttgttttagttggattaagaatataccacaatgaaaattctgtgaatacagtaaaa |
344 |
Q |
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| T |
31021176 |
tagtaatttgttttagttggattaagaatataccacaatgaaaattctgtgaatacagtaaaa |
31021238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 31020981 - 31021044
Alignment:
| Q |
33 |
aaggacaaagcaatttcataattcgatcctcaaagtatataccccactcattttacaaagcaaa |
96 |
Q |
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| T |
31020981 |
aaggacaaagcaatttcattattcgatccgcaaagtatataccccactcattttacaaagcaaa |
31021044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31030788 - 31030834
Alignment:
| Q |
1 |
tatattattaaaattcttatatattgttatataaggacaaagcaatt |
47 |
Q |
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| T |
31030788 |
tatattattaaaattcttatatattgtcatataaggacaaagcaatt |
31030834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 31030837 - 31030883
Alignment:
| Q |
70 |
tataccccactcattttacaaagc-aaataaattggacaaaaagaga |
115 |
Q |
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| T |
31030837 |
tataccccactcattttacaaagcaaaataaattggacaaaaagaga |
31030883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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