View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8045_low_25 (Length: 361)
Name: NF8045_low_25
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8045_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 13878408 - 13878078
Alignment:
| Q |
1 |
gaccaccatcgtttcgtgatcattaaacagtatacaaaagaaacatgccctaaaacccataaccacaatgacaggatctttgacaagcccattgaatcaa |
100 |
Q |
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| T |
13878408 |
gaccaccatcgtttcgttatcattaaacagtatacaaaagaaacatgccctaaaacccataaccacaatgacaggatctttgacaagcccattgaatcaa |
13878309 |
T |
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| Q |
101 |
cttgcctagaaacccacctaatgcttctctctttacctcaacacccaacaccaacaccaacacccaacctcatcaaatccctctttccgaaaaacatccc |
200 |
Q |
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| T |
13878308 |
cttgcctagaaacccacctaatgcttctctctttacctcaacacccaacaccaacacc------caacctcatcaaatccctctttccgaaaaacatccc |
13878215 |
T |
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| Q |
201 |
catacgaataatcaaaatatacggtcattgtaatggtattttatgtttggaatatgattatgattataacctaagcttaattctttggaaccctaccact |
300 |
Q |
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| T |
13878214 |
catacgaataatcaaaatatacggtcattgtaatggtattttatgtttggaatatgattatgattataccctaagcttaattctttggaaccctaccact |
13878115 |
T |
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| Q |
301 |
agagaggtccattttgtacccccacatccagcctcct |
337 |
Q |
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| T |
13878114 |
agagaggtccattttgtacccccacatccagcctcct |
13878078 |
T |
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