View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8045_low_27 (Length: 342)

Name: NF8045_low_27
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8045_low_27
NF8045_low_27
[»] chr5 (4 HSPs)
chr5 (17-142)||(4352408-4352533)
chr5 (191-295)||(4352579-4352684)
chr5 (62-137)||(4352367-4352442)
chr5 (257-289)||(29656069-29656101)
[»] chr3 (11 HSPs)
chr3 (17-142)||(12571140-12571265)
chr3 (17-142)||(13547604-13547729)
chr3 (190-289)||(12570993-12571093)
chr3 (190-289)||(13547457-13547557)
chr3 (62-137)||(12571231-12571306)
chr3 (62-137)||(13547695-13547770)
chr3 (249-297)||(11396755-11396803)
chr3 (249-296)||(28907587-28907634)
chr3 (247-297)||(13867399-13867449)
chr3 (247-289)||(52134638-52134680)
chr3 (257-298)||(3848187-3848228)
[»] chr6 (10 HSPs)
chr6 (18-142)||(4294233-4294357)
chr6 (193-297)||(4294407-4294512)
chr6 (61-137)||(4294190-4294266)
chr6 (247-299)||(8977008-8977060)
chr6 (250-297)||(4659056-4659103)
chr6 (249-298)||(3066445-3066494)
chr6 (257-298)||(30906235-30906276)
chr6 (249-297)||(33051359-33051407)
chr6 (249-300)||(19121459-19121510)
chr6 (247-289)||(27447220-27447262)
[»] scaffold0014 (3 HSPs)
scaffold0014 (17-142)||(33678-33799)
scaffold0014 (190-297)||(33846-33954)
scaffold0014 (63-137)||(33638-33712)
[»] chr1 (4 HSPs)
chr1 (247-298)||(7604858-7604909)
chr1 (250-297)||(31768413-31768460)
chr1 (257-297)||(28237336-28237376)
chr1 (257-297)||(42773322-42773362)
[»] chr4 (3 HSPs)
chr4 (247-297)||(41813496-41813546)
chr4 (250-298)||(17404767-17404815)
chr4 (247-300)||(19463014-19463066)
[»] chr8 (2 HSPs)
chr8 (247-297)||(24279061-24279111)
chr8 (247-295)||(15610343-15610391)
[»] chr7 (5 HSPs)
chr7 (247-303)||(39704314-39704370)
chr7 (247-300)||(6841421-6841474)
chr7 (250-298)||(11646704-11646752)
chr7 (257-297)||(39445848-39445888)
chr7 (247-298)||(13764943-13764994)
[»] scaffold0475 (1 HSPs)
scaffold0475 (250-297)||(6353-6400)
[»] chr2 (1 HSPs)
chr2 (250-297)||(2040163-2040210)
[»] scaffold0003 (2 HSPs)
scaffold0003 (247-297)||(33478-33528)
scaffold0003 (247-289)||(40096-40138)
[»] scaffold0318 (1 HSPs)
scaffold0318 (250-298)||(6541-6589)


Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 4352408 - 4352533
Alignment:
Q  17 gatgaagattttcgtttagtagtattcattagaagtagtaggtatgaaattctttaagatgaatgatttatttttatcattgttatgatgaagattttca 116  Q
    ||||||||||||||||  ||||||||||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4352408 gatgaagattttcgttcggtagtattcattagaagtaatcagtatgaaattctttaagatgaaggatttatttttatcattgttatgatgaagattttca 4352507  T
Q  117 tttgatagtattcattagaagaataa 142  Q
    ||||||||||||||||||||||||||    
T  4352508 tttgatagtattcattagaagaataa 4352533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 191 - 295
Target Start/End: Original strand, 4352579 - 4352684
Alignment:
Q  191 agagaagaatgcgtgaatc-ttaactttattcgacgcccggtttggtctgaggcaagagcttctctattgtttatgatccgggcggtagcacgggtaaaa 289  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||| |||||||||||| | |||||||    
T  4352579 agagaagaatgcgtgaatccttaactttattcgacgtccggtttggtctaaggcaagagcttctccattgtttatgacccgggcggtagcgcaggtaaaa 4352678  T
Q  290 attcta 295  Q
     |||||    
T  4352679 gttcta 4352684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 4352367 - 4352442
Alignment:
Q  62 gaaattctttaagatgaatgatttatttttatcattgttatgatgaagattttcatttgatagtattcattagaag 137  Q
    |||||||||| ||||||| |||||||||||  |||| || |||||||||||||| || | ||||||||||||||||    
T  4352367 gaaattctttgagatgaaggatttatttttgacatttttttgatgaagattttcgttcggtagtattcattagaag 4352442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 289
Target Start/End: Complemental strand, 29656101 - 29656069
Alignment:
Q  257 ttgtttatgatccgggcggtagcacgggtaaaa 289  Q
    |||||||||| ||||||||||||||||||||||    
T  29656101 ttgtttatgacccgggcggtagcacgggtaaaa 29656069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 12571265 - 12571140
Alignment:
Q  17 gatgaagattttcgtttagtagtattcattagaagtagtaggtatgaaattctttaagatgaatgatttatttttatcattgttatgatgaagattttca 116  Q
    ||||||||||||| ||  |||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12571265 gatgaagattttcattccgtagtattcattagaagtagtcagtatgaaattctttaagatgaaagatttatttttatcattgttatgatgaagattttca 12571166  T
Q  117 tttgatagtattcattagaagaataa 142  Q
    ||||||||||||||||||||||||||    
T  12571165 tttgatagtattcattagaagaataa 12571140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 13547729 - 13547604
Alignment:
Q  17 gatgaagattttcgtttagtagtattcattagaagtagtaggtatgaaattctttaagatgaatgatttatttttatcattgttatgatgaagattttca 116  Q
    ||||||||||||| ||  |||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13547729 gatgaagattttcattccgtagtattcattagaagtagtcagtatgaaattctttaagatgaaagatttatttttatcattgttatgatgaagattttca 13547630  T
Q  117 tttgatagtattcattagaagaataa 142  Q
    ||||||||||||||||||||||||||    
T  13547629 tttgatagtattcattagaagaataa 13547604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 190 - 289
Target Start/End: Complemental strand, 12571093 - 12570993
Alignment:
Q  190 gagagaagaatgcgtgaatc-ttaactttattcgacgcccggtttggtctgaggcaagagcttctctattgtttatgatccgggcggtagcacgggtaaa 288  Q
    |||| ||||||||||||||| |||||||| || |||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||    
T  12571093 gagaaaagaatgcgtgaatccttaactttgtttgacgcctggtttggtctgaggcaagagcttctccattgtttatgacccgggtggtagcacaggtaaa 12570994  T
Q  289 a 289  Q
    |    
T  12570993 a 12570993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 190 - 289
Target Start/End: Complemental strand, 13547557 - 13547457
Alignment:
Q  190 gagagaagaatgcgtgaatc-ttaactttattcgacgcccggtttggtctgaggcaagagcttctctattgtttatgatccgggcggtagcacgggtaaa 288  Q
    |||| ||||||||||||||| |||||||| || |||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||    
T  13547557 gagaaaagaatgcgtgaatccttaactttgtttgacgcctggtttggtctgaggcaagagcttctccattgtttatgacccgggtggtagcacaggtaaa 13547458  T
Q  289 a 289  Q
    |    
T  13547457 a 13547457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 12571306 - 12571231
Alignment:
Q  62 gaaattctttaagatgaatgatttatttttatcattgttatgatgaagattttcatttgatagtattcattagaag 137  Q
    |||||||||| ||||||| |||||||||||  |||| || |||||||||||||||||   ||||||||||||||||    
T  12571306 gaaattctttgagatgaaggatttatttttgacatttttttgatgaagattttcattccgtagtattcattagaag 12571231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 13547770 - 13547695
Alignment:
Q  62 gaaattctttaagatgaatgatttatttttatcattgttatgatgaagattttcatttgatagtattcattagaag 137  Q
    |||||||||| ||||||| |||||||||||  |||| || |||||||||||||||||   ||||||||||||||||    
T  13547770 gaaattctttgagatgaaggatttatttttgacatttttttgatgaagattttcattccgtagtattcattagaag 13547695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 11396755 - 11396803
Alignment:
Q  249 cttctctattgtttatgatccgggcggtagcacgggtaaaaattctagt 297  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||||    
T  11396755 cttctccattgtttatgacccgggcggtagcacgggtaaaagttctagt 11396803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 296
Target Start/End: Original strand, 28907587 - 28907634
Alignment:
Q  249 cttctctattgtttatgatccgggcggtagcacgggtaaaaattctag 296  Q
    |||||| ||||||||||| |||||| ||||||||||||||| ||||||    
T  28907587 cttctccattgtttatgacccgggcagtagcacgggtaaaagttctag 28907634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 13867449 - 13867399
Alignment:
Q  247 agcttctctattgtttatgatccgggcggtagcacgggtaaaaattctagt 297  Q
    |||||||| ||||||||||| ||| ||||||||||| |||||| |||||||    
T  13867449 agcttctccattgtttatgacccgagcggtagcacgagtaaaagttctagt 13867399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 52134638 - 52134680
Alignment:
Q  247 agcttctctattgtttatgatccgggcggtagcacgggtaaaa 289  Q
    |||||||| ||||||||||| ||||||||||||| ||||||||    
T  52134638 agcttctccattgtttatgacccgggcggtagcatgggtaaaa 52134680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 298
Target Start/End: Original strand, 3848187 - 3848228
Alignment:
Q  257 ttgtttatgatccgggcggtagcacgggtaaaaattctagta 298  Q
    |||||||||| |||| ||||||||||||||||| ||||||||    
T  3848187 ttgtttatgacccggacggtagcacgggtaaaagttctagta 3848228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 4294233 - 4294357
Alignment:
Q  18 atgaagattttcgtttagtagtattcattagaagtagtaggtatgaaattctttaagatgaatgatttatttttatcattgttatgatgaagattttcat 117  Q
    |||||||||||||||  ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  4294233 atgaagattttcgttcggtagtattcattagaagtagtcggtatgaaattttttaagatgaaggatttatttttatcattgttatgatgaagatttttat 4294332  T
Q  118 ttgatagtattcattagaagaataa 142  Q
    |||||||||||||||||||||||||    
T  4294333 ttgatagtattcattagaagaataa 4294357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 4294407 - 4294512
Alignment:
Q  193 agaagaatgcgtgaatc-ttaactttattcgacgcccggtttggtctgaggcaagagcttctctattgtttatgatccgggcggtagcacgggtaaaaat 291  Q
    |||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| ||| ||||||| | |||||||| |    
T  4294407 agaagaatgcatgaatccttaactttattcgacgcccgatttggtccgaggcaagagcttctccattgtttatgacccgagcggtagtatgggtaaaagt 4294506  T
Q  292 tctagt 297  Q
    ||||||    
T  4294507 tctagt 4294512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 4294190 - 4294266
Alignment:
Q  61 tgaaattctttaagatgaatgatttatttttatcattgttatgatgaagattttcatttgatagtattcattagaag 137  Q
    ||||||||||| ||||||| |||||||||||  |||| || | |||||||||||| || | ||||||||||||||||    
T  4294190 tgaaattctttgagatgaaggatttatttttgacattttttttatgaagattttcgttcggtagtattcattagaag 4294266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 8977008 - 8977060
Alignment:
Q  247 agcttctctattgtttatgatccgggcggtagcacgggtaaaaattctagtat 299  Q
    ||||| || ||||||||||| |||||||||||||||||||||| |||||||||    
T  8977008 agcttttccattgtttatgacccgggcggtagcacgggtaaaagttctagtat 8977060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 4659103 - 4659056
Alignment:
Q  250 ttctctattgtttatgatccgggcggtagcacgggtaaaaattctagt 297  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  4659103 ttctccattgtttatgatccggtcggtagcacgggtaaaagttctagt 4659056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 3066445 - 3066494
Alignment:
Q  249 cttctctattgtttatgatccgggcggtagcacgggtaaaaattctagta 298  Q
    |||||| ||||||||||| || ||||||||||||||||||| ||||||||    
T  3066445 cttctccattgtttatgacccaggcggtagcacgggtaaaagttctagta 3066494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 298
Target Start/End: Complemental strand, 30906276 - 30906235
Alignment:
Q  257 ttgtttatgatccgggcggtagcacgggtaaaaattctagta 298  Q
    |||||||||| |||||||||||||||||||||| ||||||||    
T  30906276 ttgtttatgacccgggcggtagcacgggtaaaagttctagta 30906235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 33051407 - 33051359
Alignment:
Q  249 cttctctattgtttatgatccgggcggtagcacgggtaaaaattctagt 297  Q
    |||||| ||||||||||| |||||||||||||||| ||||| |||||||    
T  33051407 cttctccattgtttatgacccgggcggtagcacggataaaagttctagt 33051359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 300
Target Start/End: Original strand, 19121459 - 19121510
Alignment:
Q  249 cttctctattgtttatgatccgggcggtagcacgggtaaaaattctagtata 300  Q
    |||||| ||||| ||||| |||| ||||||||||||||||| ||||||||||    
T  19121459 cttctccattgtctatgacccggacggtagcacgggtaaaagttctagtata 19121510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 27447220 - 27447262
Alignment:
Q  247 agcttctctattgtttatgatccgggcggtagcacgggtaaaa 289  Q
    ||||| || ||||||||||| ||||||||||||||||||||||    
T  27447220 agcttttccattgtttatgacccgggcggtagcacgggtaaaa 27447262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 33678 - 33799
Alignment:
Q  17 gatgaagattttcgtttagtagtattcattagaagtagtaggtatgaaattctttaagatgaatgatttatttttatcattgttatgatgaagattttca 116  Q
    |||||||||||||||   ||||||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33678 gatgaagattttcgtacggtagtattcatgagaagtagtcggtatgaaattttttaagatgaaggatttatttttatcattgttatgatgaagattttca 33777  T
Q  117 tttgatagtattcattagaagaataa 142  Q
    |||||||    |||||||||||||||    
T  33778 tttgata----tcattagaagaataa 33799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 190 - 297
Target Start/End: Original strand, 33846 - 33954
Alignment:
Q  190 gagagaagaatgcgtgaatc-ttaactttattcgacgcccggtttggtctgaggcaagagcttctctattgtttatgatccgggcggtagcacgggtaaa 288  Q
    |||||||||||| ||||||| |||| ||||||||||||||| ||||||||||||||| |||||||  ||||||||||| |||||| ||||||||||||||    
T  33846 gagagaagaatgtgtgaatccttaaatttattcgacgcccgatttggtctgaggcaaaagcttcttcattgtttatgacccgggcagtagcacgggtaaa 33945  T
Q  289 aattctagt 297  Q
    | |||||||    
T  33946 agttctagt 33954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 33638 - 33712
Alignment:
Q  63 aaattctttaagatgaatgatttatttttatcattgttatgatgaagattttcatttgatagtattcattagaag 137  Q
    ||||||||| ||||||| |||||||||||  |||| || |||||||||||||| |  | |||||||||| |||||    
T  33638 aaattctttgagatgaaggatttatttttgacatttttttgatgaagattttcgtacggtagtattcatgagaag 33712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 7604909 - 7604858
Alignment:
Q  247 agcttctctattgtttatgatccgggcggtagcacgggtaaaaattctagta 298  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  7604909 agcttctccattgtttatgatccgggcggtagcacgggtaaaagttctagta 7604858  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 31768460 - 31768413
Alignment:
Q  250 ttctctattgtttatgatccgggcggtagcacgggtaaaaattctagt 297  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||    
T  31768460 ttctccattgtttatgatccgggcggtagcacgggtaaaagttctagt 31768413  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 28237376 - 28237336
Alignment:
Q  257 ttgtttatgatccgggcggtagcacgggtaaaaattctagt 297  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  28237376 ttgtttatgacccgggtggtagcacgggtaaaaattctagt 28237336  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 42773322 - 42773362
Alignment:
Q  257 ttgtttatgatccgggcggtagcacgggtaaaaattctagt 297  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  42773322 ttgtttatgacccgggcggtagcacgggtaaaagttctagt 42773362  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 41813496 - 41813546
Alignment:
Q  247 agcttctctattgtttatgatccgggcggtagcacgggtaaaaattctagt 297  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  41813496 agcttctccattgtttatgatccgggcggtagcacgggtaaaagttctagt 41813546  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 17404815 - 17404767
Alignment:
Q  250 ttctctattgtttatgatccgggcggtagcacgggtaaaaattctagta 298  Q
    ||||| ||||||||||| ||| |||||||||||||||||| ||||||||    
T  17404815 ttctccattgtttatgacccgagcggtagcacgggtaaaagttctagta 17404767  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 19463014 - 19463066
Alignment:
Q  247 agcttctctattgtttatgatccgggcggtagcacgggtaaaaattctagtata 300  Q
    |||||||| | ||||||||| | |||||||||||| ||||||||||||||||||    
T  19463014 agcttctccactgtttatgacctgggcggtagcac-ggtaaaaattctagtata 19463066  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 24279061 - 24279111
Alignment:
Q  247 agcttctctattgtttatgatccgggcggtagcacgggtaaaaattctagt 297  Q
    |||||||| ||||||||||||||||| | ||||||||||||||||||||||    
T  24279061 agcttctccattgtttatgatccgggtgatagcacgggtaaaaattctagt 24279111  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 15610391 - 15610343
Alignment:
Q  247 agcttctctattgtttatgatccgggcggtagcacgggtaaaaattcta 295  Q
    |||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  15610391 agcttctccattgtttatgacccgggcggtagcacgggtaaaagttcta 15610343  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 39704370 - 39704314
Alignment:
Q  247 agcttctctattgtttatgatccgggcggtagcacgggtaaaaattctagtatatat 303  Q
    |||||||| ||||||||||| | |||||||||||||||||||| || ||||||||||    
T  39704370 agcttctccattgtttatgacctgggcggtagcacgggtaaaagttatagtatatat 39704314  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 6841421 - 6841474
Alignment:
Q  247 agcttctctattgtttatgatccgggcggtagcacgggtaaaaattctagtata 300  Q
    |||||||| ||||||||||| |||||| |||||||||||||||  |||||||||    
T  6841421 agcttctccattgtttatgacccgggcagtagcacgggtaaaagatctagtata 6841474  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 11646752 - 11646704
Alignment:
Q  250 ttctctattgtttatgatccgggcggtagcacgggtaaaaattctagta 298  Q
    ||||| ||||||||||| ||| |||||||||||||||||| ||||||||    
T  11646752 ttctccattgtttatgacccgagcggtagcacgggtaaaagttctagta 11646704  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 39445848 - 39445888
Alignment:
Q  257 ttgtttatgatccgggcggtagcacgggtaaaaattctagt 297  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  39445848 ttgtttatgacccgggcggtagcacgggtaaaagttctagt 39445888  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 13764943 - 13764994
Alignment:
Q  247 agcttctctattgtttatgatccgggcggtagcacgggtaaaaattctagta 298  Q
    ||||| || |||||||||||  ||||||||||||||||||||| ||||||||    
T  13764943 agcttttccattgtttatgactcgggcggtagcacgggtaaaagttctagta 13764994  T

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Target: scaffold0475 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 6400 - 6353
Alignment:
Q  250 ttctctattgtttatgatccgggcggtagcacgggtaaaaattctagt 297  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  6400 ttctccattgtttatgatccggtcggtagcacgggtaaaagttctagt 6353  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 2040210 - 2040163
Alignment:
Q  250 ttctctattgtttatgatccgggcggtagcacgggtaaaaattctagt 297  Q
    ||||| ||| ||||||| |||||||||||||||||||||| |||||||    
T  2040210 ttctccattatttatgacccgggcggtagcacgggtaaaagttctagt 2040163  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 33528 - 33478
Alignment:
Q  247 agcttctctattgtttatgatccgggcggtagcacgggtaaaaattctagt 297  Q
    ||||| || |||||||||||  ||||||||||||||||||||| |||||||    
T  33528 agcttttccattgtttatgactcgggcggtagcacgggtaaaagttctagt 33478  T

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Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 40138 - 40096
Alignment:
Q  247 agcttctctattgtttatgatccgggcggtagcacgggtaaaa 289  Q
    ||||| || ||||||||||| ||||||||||||||||||||||    
T  40138 agcttttccattgtttatgacccgggcggtagcacgggtaaaa 40096  T

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Target: scaffold0318 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 6541 - 6589
Alignment:
Q  250 ttctctattgtttatgatccgggcggtagcacgggtaaaaattctagta 298  Q
    ||||| |||| |||||| ||||||| |||||||||||||| ||||||||    
T  6541 ttctccattggttatgacccgggcgatagcacgggtaaaagttctagta 6589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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