View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8045_low_28 (Length: 301)

Name: NF8045_low_28
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8045_low_28
NF8045_low_28
[»] chr6 (6 HSPs)
chr6 (58-279)||(13704488-13704709)
chr6 (5-92)||(21689339-21689427)
chr6 (20-61)||(13706028-13706069)
chr6 (20-61)||(13713519-13713560)
chr6 (4-60)||(19730963-19731018)
chr6 (23-88)||(28952569-28952634)
[»] chr3 (3 HSPs)
chr3 (19-88)||(8711735-8711804)
chr3 (19-88)||(9063622-9063691)
chr3 (7-46)||(13178458-13178498)
[»] chr8 (4 HSPs)
chr8 (22-92)||(16226818-16226888)
chr8 (22-92)||(16227036-16227106)
chr8 (1-60)||(5825770-5825828)
chr8 (1-44)||(5828410-5828454)
[»] scaffold0527 (2 HSPs)
scaffold0527 (5-71)||(1026-1093)
scaffold0527 (5-71)||(9089-9156)
[»] chr5 (2 HSPs)
chr5 (1-62)||(28759960-28760019)
chr5 (1-60)||(24885804-24885861)
[»] scaffold0032 (1 HSPs)
scaffold0032 (3-63)||(78815-78873)
[»] chr7 (5 HSPs)
chr7 (1-46)||(20052854-20052899)
chr7 (1-60)||(19843047-19843105)
chr7 (1-60)||(19414158-19414215)
chr7 (19-60)||(9704769-9704810)
chr7 (5-37)||(602260-602292)
[»] chr4 (3 HSPs)
chr4 (19-62)||(12319556-12319599)
chr4 (19-60)||(13571036-13571077)
chr4 (31-71)||(24955516-24955556)
[»] scaffold0300 (1 HSPs)
scaffold0300 (1-60)||(11572-11630)
[»] scaffold0002 (1 HSPs)
scaffold0002 (7-46)||(128490-128530)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 58 - 279
Target Start/End: Complemental strand, 13704709 - 13704488
Alignment:
Q  58 cttattctctaggattctagctaaagacttcccttttgtttaagtacaactgcttaagacttctcatcacaggaatcttggaattatctccaccttcgat 157  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13704709 cttattctctaggattctaactaaagacttcccttttgtttaagtacaactgcttaagacttctcatcacaggaatcttggaatcatctccaccttcgat 13704610  T
Q  158 tgattctaaaaatgcatcgtgataattaaatatccaacctttagttcctataatgtgatagctacatcttgacttaaggaactatacttattttcttatt 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13704609 tgattctaaaaatgcatcgtgataattaaatatccaacctttagttcctataatgtgatagctacatctttacttaaggaactatacttattttcttatt 13704510  T
Q  258 gttgtatgcaccttttcttgag 279  Q
    ||||||||||||||||||||||    
T  13704509 gttgtatgcaccttttcttgag 13704488  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 21689427 - 21689339
Alignment:
Q  5 tgctcaagcaca-cagcaagagacttatatgctctaggactctctacctaaagacttattctctaggattctagctaaagacttccctt 92  Q
    |||||||||||| | ||||||||||| ||| ||||| || ||||||||||||||||||| |||||||| |||| |||||||||||||||    
T  21689427 tgctcaagcacaactgcaagagacttctatactctaagaatctctacctaaagacttatgctctaggactctatctaaagacttccctt 21689339  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 13706069 - 13706028
Alignment:
Q  20 caagagacttatatgctctaggactctctacctaaagactta 61  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  13706069 caagagacttctatgctctaggactctctacctaaagactta 13706028  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 13713560 - 13713519
Alignment:
Q  20 caagagacttatatgctctaggactctctacctaaagactta 61  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  13713560 caagagacttctatgctctaggactctctacctaaagactta 13713519  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 19730963 - 19731018
Alignment:
Q  4 atgctcaagcaca-cagcaagagacttatatgctctaggactctctacctaaagactt 60  Q
    ||||||||||||| | |||||||||||||||| |||||||  ||||||||||||||||    
T  19730963 atgctcaagcacaactgcaagagacttatatgttctagga--ctctacctaaagactt 19731018  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 28952634 - 28952569
Alignment:
Q  23 gagacttatatgctctaggactctctacctaaagacttattctctaggattctagctaaagacttc 88  Q
    ||||||| ||| |||||  ||||||||||||||||||| | ||||| || |||| |||||||||||    
T  28952634 gagacttctattctctataactctctacctaaagacttctgctctaagactctacctaaagacttc 28952569  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 8711804 - 8711735
Alignment:
Q  19 gcaagagacttatatgctctaggactctctacctaaagacttattctctaggattctagctaaagacttc 88  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  8711804 gcaagagacttttatgctctaggactctctacctaaagacttatgctctaggactctacctaaagacttc 8711735  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 9063691 - 9063622
Alignment:
Q  19 gcaagagacttatatgctctaggactctctacctaaagacttattctctaggattctagctaaagacttc 88  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  9063691 gcaagagacttttatgctctaggactctctacctaaagacttatgctctaggactctacctaaagacttc 9063622  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 13178498 - 13178458
Alignment:
Q  7 ctcaagcaca-cagcaagagacttatatgctctaggactct 46  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  13178498 ctcaagcacaactgcaagagacttatatgctctaggactct 13178458  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 16226818 - 16226888
Alignment:
Q  22 agagacttatatgctctaggactctctacctaaagacttattctctaggattctagctaaagacttccctt 92  Q
    |||||||| |||||||||||| ||||||||||||||||| |||||||||| | || |||||||||||||||    
T  16226818 agagacttctatgctctaggaatctctacctaaagacttcttctctaggactatacctaaagacttccctt 16226888  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 16227036 - 16227106
Alignment:
Q  22 agagacttatatgctctaggactctctacctaaagacttattctctaggattctagctaaagacttccctt 92  Q
    |||||||| |||||||||||| |||||||||| |||||| |||||||||| |||| |||||||||||||||    
T  16227036 agagacttctatgctctaggaatctctacctatagacttcttctctaggactctacctaaagacttccctt 16227106  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5825770 - 5825828
Alignment:
Q  1 tcaatgctcaagcaca-cagcaagagacttatatgctctaggactctctacctaaagactt 60  Q
    |||||||||||||||| | |||| |||||||||||||||||||  || |||||||||||||    
T  5825770 tcaatgctcaagcacaactgcaaaagacttatatgctctagga--ctttacctaaagactt 5825828  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5828410 - 5828454
Alignment:
Q  1 tcaatgctcaagcaca-cagcaagagacttatatgctctaggact 44  Q
    |||||||| ||||||| | ||||||||||||||||||||||||||    
T  5828410 tcaatgcttaagcacaactgcaagagacttatatgctctaggact 5828454  T

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Target: scaffold0527 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 1093 - 1026
Alignment:
Q  5 tgctcaagcacaca-gcaagagacttatatgctctaggactctctacctaaagacttattctctagga 71  Q
    |||||||||||||| ||||||||||| ||||||||| || ||||||||||||||||||| ||||||||    
T  1093 tgctcaagcacacatgcaagagacttttatgctctaagaatctctacctaaagacttatgctctagga 1026  T

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Target: scaffold0527; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 9156 - 9089
Alignment:
Q  5 tgctcaagcacaca-gcaagagacttatatgctctaggactctctacctaaagacttattctctagga 71  Q
    |||||||||||||| ||||||||||| ||||||||| || ||||||||||||||||||| ||||||||    
T  9156 tgctcaagcacacatgcaagagacttttatgctctaagaatctctacctaaagacttatgctctagga 9089  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 28759960 - 28760019
Alignment:
Q  1 tcaatgctcaagcacacagcaagagacttatatgctctaggactctctacctaaagacttat 62  Q
    ||||||||||| ||||||||||||||||| ||||||||||||  ||||||||||||||||||    
T  28759960 tcaatgctcaatcacacagcaagagacttttatgctctagga--ctctacctaaagacttat 28760019  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 24885861 - 24885804
Alignment:
Q  1 tcaatgctcaagcacacagcaagagacttatatgctctaggactctctacctaaagactt 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||  ||||||||||||||||    
T  24885861 tcaatgctcaagcacacagcaagggacttctatgctctagga--ctctacctaaagactt 24885804  T

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Target: scaffold0032 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 78815 - 78873
Alignment:
Q  3 aatgctcaagcacacagcaagagacttatatgctctaggactctctacctaaagacttatt 63  Q
    |||||||||||||||||||||| |||| ||||||||||||  |||||||||||||||||||    
T  78815 aatgctcaagcacacagcaagaaacttctatgctctagga--ctctacctaaagacttatt 78873  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 20052854 - 20052899
Alignment:
Q  1 tcaatgctcaagcacacagcaagagacttatatgctctaggactct 46  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  20052854 tcaatgctcaagcacacagcaagagacttctatgctctaggactct 20052899  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 19843105 - 19843047
Alignment:
Q  1 tcaatgctcaagcacaca-gcaagagacttatatgctctaggactctctacctaaagactt 60  Q
    |||||||||||||||| | ||||||||||| ||||||||||||  ||||||||||||||||    
T  19843105 tcaatgctcaagcacatatgcaagagacttctatgctctagga--ctctacctaaagactt 19843047  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 19414158 - 19414215
Alignment:
Q  1 tcaatgctcaagcacacagcaagagacttatatgctctaggactctctacctaaagactt 60  Q
    ||||||||||| || |||||||||||||| ||||||||||||  || |||||||||||||    
T  19414158 tcaatgctcaaccatacagcaagagacttctatgctctagga--ctatacctaaagactt 19414215  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 9704810 - 9704769
Alignment:
Q  19 gcaagagacttatatgctctaggactctctacctaaagactt 60  Q
    ||||||||||| |||||| |||||||||||||||||| ||||    
T  9704810 gcaagagacttctatgctttaggactctctacctaaatactt 9704769  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 602260 - 602292
Alignment:
Q  5 tgctcaagcacacagcaagagacttatatgctc 37  Q
    ||||||||||||||||||||||||| |||||||    
T  602260 tgctcaagcacacagcaagagacttctatgctc 602292  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 12319599 - 12319556
Alignment:
Q  19 gcaagagacttatatgctctaggactctctacctaaagacttat 62  Q
    |||||||| || | ||||||||||||||||||||||||||||||    
T  12319599 gcaagagatttctctgctctaggactctctacctaaagacttat 12319556  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 13571077 - 13571036
Alignment:
Q  19 gcaagagacttatatgctctaggactctctacctaaagactt 60  Q
    ||||||||||| |||||| |||||||||||||||||| ||||    
T  13571077 gcaagagacttctatgctttaggactctctacctaaatactt 13571036  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 24955556 - 24955516
Alignment:
Q  31 tatgctctaggactctctacctaaagacttattctctagga 71  Q
    ||||||||| |||||||||||||||||||| | ||||||||    
T  24955556 tatgctctatgactctctacctaaagacttctgctctagga 24955516  T

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Target: scaffold0300 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 11572 - 11630
Alignment:
Q  1 tcaatgctcaagcaca-cagcaagagacttatatgctctaggactctctacctaaagactt 60  Q
    |||||||||||||||| | |||| |||||| ||||||||||||  ||||||||||||||||    
T  11572 tcaatgctcaagcacaactgcaaaagacttctatgctctagga--ctctacctaaagactt 11630  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 128490 - 128530
Alignment:
Q  7 ctcaagcaca-cagcaagagacttatatgctctaggactct 46  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  128490 ctcaagcacaactgcaagagacttatatgctctaggactct 128530  T

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