View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8045_low_40 (Length: 221)
Name: NF8045_low_40
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8045_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 13881772 - 13881965
Alignment:
| Q |
12 |
agaatataccaacaattcaattattttagcagttgactgttgagttgcaatttcatctcatcaatttggtttcaagttcaatttattaactatggtttta |
111 |
Q |
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| T |
13881772 |
agaatataacaacaattcagttattttagcagttgactgttgagttgcaatttcatctcatcaatttggttgcaagttcaatttattaactatggtttta |
13881871 |
T |
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| Q |
112 |
aactcattcgtggcccatgagactttcaatttttgtatatttttctgtaaaagaaacaagtttctttatttgtagaaatattcatattagtggt |
205 |
Q |
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| T |
13881872 |
aactcattcgtggcccatgagactttcaatttttgtatatttttctgtaaaagaaacaagtttctttatttgtaggaatattcatcttagtggt |
13881965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 14021897 - 14022090
Alignment:
| Q |
12 |
agaatataccaacaattcaattattttagcagttgactgttgagttgcaatttcatctcatcaatttggtttcaagttcaatttattaactatggtttta |
111 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14021897 |
agaatataacaacaattcagttattttagcagttgactgttgagttgcaatttcatctcatcaatttggttgcaagttcaatttattaactatggtttta |
14021996 |
T |
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| Q |
112 |
aactcattcgtggcccatgagactttcaatttttgtatatttttctgtaaaagaaacaagtttctttatttgtagaaatattcatattagtggt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
14021997 |
aactcattcgtggcccatgagactttcaatttttgtatatttttctgtaaaagaaacaagtttctttatttgtaggaatattcatcttagtggt |
14022090 |
T |
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