View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8045_low_5 (Length: 656)
Name: NF8045_low_5
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8045_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 48024026 - 48023622
Alignment:
| Q |
1 |
cactcctccaatactttcatcatccgtctctctcgaattctcacgaaacctaaaggcatatgcatcattcttgatctgatctatttgtttatatgtaaat |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48024026 |
cactcctccaatactttcatcacccgtctctctcgaattctcacgaaacctaaaggcatatgcatcattcttgatctgatctatttgttgatatgtaaat |
48023927 |
T |
|
| Q |
101 |
gtgctaatttatacttattgatccatgactaactggaataaattctaacgctaaatacacgagtcaaattaaagttatcacagggaactttcaaggagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48023926 |
gtgctaatttatacttattgatccatgactaactagaataaattctaacgctaaatacacgagtcaaattaaagttatcacagggaactttcaaggagaa |
48023827 |
T |
|
| Q |
201 |
cccaaacattattggttctctatccgcaacttgattggtttctctcaatactactacattattaatttggacatgatcaaaatccaacataaatgcatca |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48023826 |
cccaaacattattggttctgtatccgcaacttgattggtttctctcaata---ctacattattaatttggacatgatcaaaatccaacataaatgcatca |
48023730 |
T |
|
| Q |
301 |
attttgctaactagtcgttacgggcatgagtgtgtcagtgttaacacttgcattaacagctaacaaagagtttggttctatcatcgatgagtttaagcat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48023729 |
attttgctaactagtcgttacgggcatgagtgtgtcagtgttaacacttgcattaacagctaacaaagagtttggttctatcatcaatgagtttaagcat |
48023630 |
T |
|
| Q |
401 |
ttctcctt |
408 |
Q |
| |
|
|||||||| |
|
|
| T |
48023629 |
ttctcctt |
48023622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 433 - 640
Target Start/End: Complemental strand, 48023601 - 48023394
Alignment:
| Q |
433 |
agtcaaaatatttctcctttgctatcatcaaactccggagagcagcccaaagcttaacttttagaatagaattgacaaggggcttcattcatgtccactc |
532 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48023601 |
agtcaaaatatttctcctttgctatcatcaaactccggagagcagcccaaagcttaacttttagaatagaattgacaaggggcttcattcatgtctactc |
48023502 |
T |
|
| Q |
533 |
ttgggaaattgttgcattgcaactaattctaatcaatctagacaaggagcttccacacaatatgttcttgctctacttgtacctgaatctgaataagaca |
632 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48023501 |
ttgggaaattgttgcattgcaactaattctaatcaatctagacaaggagcttccacacaatatgttcttgctctacttgtacctgaatctgaataagaca |
48023402 |
T |
|
| Q |
633 |
cagtgatg |
640 |
Q |
| |
|
|||||||| |
|
|
| T |
48023401 |
cagtgatg |
48023394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University