View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8045_low_6 (Length: 641)
Name: NF8045_low_6
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8045_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 18 - 623
Target Start/End: Original strand, 38023929 - 38024534
Alignment:
| Q |
18 |
attaattgttgtaatgaaatcatcgttgcagctgagaagattggattgacatcaatccaaccattttacgctcaaaatggatctctgaatgagattcttg |
117 |
Q |
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| T |
38023929 |
attaattgttgtaatgaaatcatcgttgcagctgagaagattggattgacatcaatccaaccattttacgctcaaaatggatctctgaatgagattcttg |
38024028 |
T |
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| Q |
118 |
gtggtctcaactttggatcaacacaagctacaatcatgaaccagggaggcttcagccaccagtctctaaaccaacaactacgccaagtctctgagagcat |
217 |
Q |
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| T |
38024029 |
gtggtctcaactttggatcaacacaagctacaatcatgaaccagggaggcttcagccaccagtctctaaaccaacaactacgccaagtctctgagagcat |
38024128 |
T |
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| Q |
218 |
gcagctactgcaactgcagctaagcgaaaaagctgctcttgaatttacaaaatcttccatctttttcctctcatttggaaaagaagattacattgattta |
317 |
Q |
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| T |
38024129 |
gcagctactgcaactgcagctaagcgaaaaagctgctcttgaatttacaaaatcttccatctttttcctctcatttggaaaagaagattacattgattta |
38024228 |
T |
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| Q |
318 |
ttcctacacaactcttccaaccctatgttaaaccacagcgcacaatattttgcaaccattttggtcaatcagatgacaaatgcaatgaggtatctttatg |
417 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38024229 |
ttcctacacaactcttccaaccctatgataaaccacagcgcacaatattttgcgaccattttggtcaatcagatgacaaatgcaatgaggtatctttatg |
38024328 |
T |
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| Q |
418 |
atgcaaaagcaaggaaaatcatatgcttaggagttcttcctttgggatgtacaccccgaatagcgtgggagtcaaatcagacatcagatggtgttatcaa |
517 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38024329 |
atgcaaacgcaaggaaaatcatatgcttaggagttcttcctttgggatgtacaccccgaatagcgtgggagtcaaatcagacatcagatggtgttatcaa |
38024428 |
T |
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| Q |
518 |
tggaaatggttgtgtagataatgtcaataattgggtcttggaatacaatagattgctggatgagcacatagtccagcttaatgcagaattttctgatgct |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38024429 |
tggaaatggttgtgtagataatgtcaataattgggtcttggaatacaatagattgttggatgagcacatagtccagcttaatgcagaattttctgatgct |
38024528 |
T |
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| Q |
618 |
catata |
623 |
Q |
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|||||| |
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| T |
38024529 |
catata |
38024534 |
T |
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