View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8045_low_8 (Length: 595)
Name: NF8045_low_8
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8045_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 141 - 576
Target Start/End: Complemental strand, 9278984 - 9278549
Alignment:
| Q |
141 |
gaaaaatccatttagtgaggttcactttgcaacatatgtaacatgaatagagtttaacttccaactttccaattaaaacatgagtagttaattgtattgc |
240 |
Q |
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| T |
9278984 |
gaaaaatccatttagtgaggttcactttgcaacatatgtaacatgaatagagtttaacttccaactttccaattaaaacatgagtagttaattgtattgc |
9278885 |
T |
|
| Q |
241 |
tggtggaggacgtgacaagtgacaacaacattttatattgaagtcacccaacaatccatttggcatcataatataaaggatacatataatagtgttctct |
340 |
Q |
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| T |
9278884 |
tggtggaggacgtgacaagtgacaacaacattttatattgaagtcacccaacaatccatttggcatcataatataaaggatacatataatagtgttctct |
9278785 |
T |
|
| Q |
341 |
ccttagtccaattcccttctccacacatgactagaagatcaagaaacactttattagtatatatataggcataaacccttttttactatgacgaaaaggg |
440 |
Q |
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| T |
9278784 |
ccttagtccaattcccttctccacacatgactagaagatcaagaaacactttattagtatatatataggcataaacccttttttactatgacgaaaaggg |
9278685 |
T |
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| Q |
441 |
aaactatggctaccctctcaccaaagaaatcttgtcgttatggtattagatctattagcttaccaacaagatcacatccaagcacaattaaaattcaaga |
540 |
Q |
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| T |
9278684 |
aaactatggctaccctctcaccaaagaaatcttgtcgttatggtattagatctattagtttaccaacaagatcacatccaagcacaattaaaattcaaga |
9278585 |
T |
|
| Q |
541 |
ggagctaaacaagtttaaatcatatgaggcaatgtc |
576 |
Q |
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| T |
9278584 |
ggagctaaacaagtttaaatcatatgaggcaatgtc |
9278549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 9279164 - 9279022
Alignment:
| Q |
1 |
cacgaatattgcatctatgat--gccatatcttgaattctatagctcaatgaagtccacaaaattttgcaaagacaagttttaataattaaccgaccttc |
98 |
Q |
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| T |
9279164 |
cacgaatattgcatctatgatttgccatatcttgaattctatagctcaatgaagtccacaaaattttgcaaagacaagttttaataattaaccgaccttc |
9279065 |
T |
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| Q |
99 |
atgaatgaaacaattcaaaaggtatcatgaacagttgattagg |
141 |
Q |
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| T |
9279064 |
atgaatgaaacaattcaaaaggtatcatgaacagttgattagg |
9279022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 528
Target Start/End: Original strand, 31508888 - 31508937
Alignment:
| Q |
479 |
tatggtattagatctattagcttaccaacaagatcacatccaagcacaat |
528 |
Q |
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| T |
31508888 |
tatggtgttagatctattagtttaccaacaagatcacatccaagcacaat |
31508937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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