View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8045_low_9 (Length: 570)
Name: NF8045_low_9
Description: NF8045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8045_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 150 - 382
Target Start/End: Original strand, 43558348 - 43558580
Alignment:
| Q |
150 |
ctcatatatcaccaaataagtctccaattatgtgtaacaaaatggcagcaatcgattcaccctttgaagtcaatattagccgttatatttgtaacaacaa |
249 |
Q |
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| T |
43558348 |
ctcatatatcaccaaataagtctccaattatgtgtaacaaaatggcagcaatcgattcaccctttgaagtcaatattagccgttatatttgtaacaacaa |
43558447 |
T |
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| Q |
250 |
caactcaatttgtaagtgaacgtttttaattagcaattaaagattccatctgcataacgtatatatacatgcacaatatgagatcatatatacaatcaaa |
349 |
Q |
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| T |
43558448 |
caactcaatttgtaagtgaacgtttttaattagcaattaaagattccatctgcataacgtacatatacatacacaatatgagatcatatatacaatcaaa |
43558547 |
T |
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| Q |
350 |
tattcaagtgtcattttattttataaataaatt |
382 |
Q |
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| T |
43558548 |
tattcaagtgtcattttattttataaataaatt |
43558580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 380 - 549
Target Start/End: Original strand, 43558640 - 43558809
Alignment:
| Q |
380 |
atttaatttaattttccaccagggtccctttcagctcctcactttcacagttacacttttatatatcactcttaatttatttctttaattccttaactga |
479 |
Q |
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| T |
43558640 |
atttaatttaattttccaccagggtccctttcagctcctgactttcacagttacacttttatatatcactcttaatttatttctttaattccttaactga |
43558739 |
T |
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| Q |
480 |
aaaataaccgttggaaactctatagacgatagtcatacaaatcgggtatagtaaaagctttatagaacct |
549 |
Q |
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| T |
43558740 |
aaaataaccgttggaaactctatagacgatagtcatacaaattgggtatagtaaaagctttatagaacct |
43558809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 158
Target Start/End: Original strand, 43557488 - 43557580
Alignment:
| Q |
65 |
ttgcaccttagaagcctgaactgctaaaagctggagaagaccacaaattcatgtccacgctcnnnnnnnnatcttttataagctactcatatat |
158 |
Q |
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| T |
43557488 |
ttgcaccttagaagcatgaactgctaaaagttggagaataccgcaaattcatatccacgctc-tttattgatcttttataagctactcatatat |
43557580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 43557179 - 43557207
Alignment:
| Q |
19 |
gctaggcatctaagaaatcaaaccaacta |
47 |
Q |
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| T |
43557179 |
gctaggcatctaagaaatcaaaccaacta |
43557207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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