View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8046_high_1 (Length: 457)
Name: NF8046_high_1
Description: NF8046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8046_high_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 14 - 438
Target Start/End: Original strand, 35157247 - 35157671
Alignment:
| Q |
14 |
atatcaaagagagcttgaataaggttgcagaaattagagataaatttggccttcgcatcaaagagagtgatgatcgtgttgtgcaaagacgggaaactca |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35157247 |
atatcaaagagagcttgaataaggttgcagaaattagagataaatttggccttcacatcaaagagagtgatgatcgtgttgtgcaaagacgggaaactca |
35157346 |
T |
|
| Q |
114 |
ttcccatgtaaatgattctgatgtgataggaagggaacaagataaacagaaaattgtagaactcttattcgacgatagtgatgataaaaatctatctgtt |
213 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35157347 |
ttctcatgtaaatgattctgatgtgataggaagggaacaagataaacagaaaattgtagaactcttattcgacgatagtgatgataaaaatctatctgtt |
35157446 |
T |
|
| Q |
214 |
gttgctattgtgggacttggaggtatgggaaagactacacttgcaaaagctgtgtttaatgataagagtgtagttgactcttttccattaaagatgtgga |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35157447 |
gttgctattgtgggacttggaggtatgggaaagactacacttgcaaaagttgtgtttaatgataagagtgtagttgactcttttccattaaagatgtgga |
35157546 |
T |
|
| Q |
314 |
tatgcgtctcggatgattttgatgttaagaatctgcttgttaagattattggatctgctcctgaccaaaatcaccaggagaacattaaaaactttagttt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35157547 |
tatgcgtctcggatgattttgatgttaagaatctgcttgttaagattattggatctgctcctgaccaaaatcaccaggagaacattaaaaactttagttt |
35157646 |
T |
|
| Q |
414 |
ggagcaactgaaaaatcgtcttaga |
438 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
35157647 |
ggagcaactgaaaaatcgtcttaga |
35157671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 53 - 356
Target Start/End: Original strand, 29743110 - 29743416
Alignment:
| Q |
53 |
ataaatttggccttcgcatcaaagagagtgatgatcgtgttgtgcaaagacgggaa---actcattcccatgtaaatgattctgatgtgataggaaggga |
149 |
Q |
| |
|
|||| ||||||||||| ||||| || |||||| ||| |||||| |||| || || |||||||| ||||||| ||||||||||||||||||||| || |
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|
| T |
29743110 |
ataactttggccttcgaatcaatgatagtgataatcatgttgtaaaaaggcgtgagttgactcattcgcatgtaattgattctgatgtgataggaagaga |
29743209 |
T |
|
| Q |
150 |
acaagataaacagaaaattgtagaactcttattcgacgatagtgatgataaaaatctatctgttgttgctattgtgggacttggaggtatgggaaagact |
249 |
Q |
| |
|
| | |||||||| |||||| | || |||||||| | ||||||||| |||||| ||| |||||| || ||||||| ||| ||||||| ||||||||||| |
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|
| T |
29743210 |
aaacgataaacacaaaattattgatctcttattgcaagatagtgatcataaaattctctctgttattcctattgttggaattggaggcttgggaaagact |
29743309 |
T |
|
| Q |
250 |
acacttgcaaaagctgtgtttaatgataagagtgtagttgactcttttccattaaagatgtggatatgcgtctcggatgattttgatgttaagaatctgc |
349 |
Q |
| |
|
|| |||||||| | ||||| |||||||||||| ||| || |||||||||||||||||||| | || ||||| ||||||||||| || || |||||| |
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|
| T |
29743310 |
acgcttgcaaagacagtgttcaatgataagagtttagacgagacttttccattaaagatgtgggtgtgtgtctccgatgattttgaacttcagcatctgc |
29743409 |
T |
|
| Q |
350 |
ttgttaa |
356 |
Q |
| |
|
||||||| |
|
|
| T |
29743410 |
ttgttaa |
29743416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 109 - 356
Target Start/End: Original strand, 29750206 - 29750453
Alignment:
| Q |
109 |
actcattcccatgtaaatgattctgatgtgataggaagggaacaagataaacagaaaattgtagaactcttattcgacgatagtgatgataaaaatctat |
208 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||| | ||||| || |||||| | || |||||||| | ||||||| | |||||| ||| | |
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|
| T |
29750206 |
actcattcgcatgtagttgattctgatgtgataggaagggattacgataagcaaaaaattattgatctcttattgcaagatagtggtcataaaagtctct |
29750305 |
T |
|
| Q |
209 |
ctgttgttgctattgtgggacttggaggtatgggaaagactacacttgcaaaagctgtgtttaatgataagagtgtagttgactcttttccattaaagat |
308 |
Q |
| |
|
||||| || ||||||| ||| ||||||| |||||||||||||||||||||| | ||||| |||||||||||| ||| || | |||||||||||||| |
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|
| T |
29750306 |
ctgttattcctattgttggaattggaggcttgggaaagactacacttgcaaagacggtgttcaatgataagagtttagacgagacatttccattaaagat |
29750405 |
T |
|
| Q |
309 |
gtggatatgcgtctcggatgattttgatgttaagaatctgcttgttaa |
356 |
Q |
| |
|
|||| | || ||||| ||||||||||| || || ||||||| ||||| |
|
|
| T |
29750406 |
gtgggtgtgtgtctccgatgattttgaacttcagcatctgctcgttaa |
29750453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 109 - 335
Target Start/End: Complemental strand, 29603088 - 29602862
Alignment:
| Q |
109 |
actcattcccatgtaaatgattctgatgtgataggaagggaacaagataaacagaaaattgtagaactcttattcgacgatagtgatgataaaaatctat |
208 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||| | ||||| || |||||| | || |||||||| | ||||||| | |||||| ||| | |
|
|
| T |
29603088 |
actcattcgcatgtagttgattctgatgtgataggaagggattacgataagcaaaaaattattgatctcttattgcaagatagtggtcataaaagtctct |
29602989 |
T |
|
| Q |
209 |
ctgttgttgctattgtgggacttggaggtatgggaaagactacacttgcaaaagctgtgtttaatgataagagtgtagttgactcttttccattaaagat |
308 |
Q |
| |
|
||||| || ||||||| ||| ||||||| |||||||||||||||||||||| | ||||| |||||||||||| ||| || |||| ||||||||||| |
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|
| T |
29602988 |
ctgttattcctattgttggaattggaggcttgggaaagactacacttgcaaagacggtgttcaatgataagagtttagacgagactttcccattaaagat |
29602889 |
T |
|
| Q |
309 |
gtggatatgcgtctcggatgattttga |
335 |
Q |
| |
|
|||| | || ||||| ||||||||||| |
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|
| T |
29602888 |
gtgggtgtgtgtctccgatgattttga |
29602862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 35982244 - 35982203
Alignment:
| Q |
220 |
attgtgggacttggaggtatgggaaagactacacttgcaaaa |
261 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
35982244 |
attgtgggaattggaggtttgggaaagactacacttgcaaaa |
35982203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 36003656 - 36003615
Alignment:
| Q |
220 |
attgtgggacttggaggtatgggaaagactacacttgcaaaa |
261 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
36003656 |
attgtgggaattggaggtttgggaaagactacacttgcaaaa |
36003615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 35958218 - 35958160
Alignment:
| Q |
223 |
gtgggacttggaggtatgggaaagactacacttgcaaaagctgtgtttaatgataagag |
281 |
Q |
| |
|
|||||| |||||||| |||||||||| ||||||||||| | ||||| ||||||||||| |
|
|
| T |
35958218 |
gtgggaattggaggtttgggaaagacaacacttgcaaagtcggtgttcaatgataagag |
35958160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 58 - 356
Target Start/End: Original strand, 49351751 - 49352055
Alignment:
| Q |
58 |
tttggccttcgcatcaaagagagtgatgatcgtgttgtgcaaagacgggaa---actcattcccatgtaaatgattctgatgtgataggaagggaacaag |
154 |
Q |
| |
|
|||||||||| ||||| || |||||| |||||||||| |||| || ||| || ||||| |||| | ||||||||||||||||||||||||||| | |
|
|
| T |
49351751 |
tttggccttcaaatcaatgatagtgataatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattgattctgatgtgataggaagggaacatg |
49351850 |
T |
|
| Q |
155 |
ataaacagaaaattgtagaactcttattcgacgatagtgatgataaaaat---ctatctgttgttgctattgtgggacttggaggtatgggaaagactac |
251 |
Q |
| |
|
||||||| ||||| | || | ||||| | ||||| | ||||| ||| || |||||| || || |||| ||| ||||||| | ||||||||||| |
|
|
| T |
49351851 |
ataaacaaaaaatcattgatatgttattgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactac |
49351950 |
T |
|
| Q |
252 |
acttgcaaaagctgtgtttaatgataagagtgtagttgactcttttccattaaagatgtggatatgcgtctcggatgattttgatgttaagaatctgctt |
351 |
Q |
| |
|
||||||||| || |||||||||||||||||| ||| ||| |||||||||| ||||||||| | || ||||| ||||||||||| |||||||||||||| |
|
|
| T |
49351951 |
acttgcaaaggcagtgtttaatgataagagtttagatgagacttttccattgaagatgtgggtgtgtgtctctgatgattttgaacttaagaatctgctt |
49352050 |
T |
|
| Q |
352 |
gttaa |
356 |
Q |
| |
|
||||| |
|
|
| T |
49352051 |
gttaa |
49352055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 58 - 356
Target Start/End: Original strand, 49340387 - 49340691
Alignment:
| Q |
58 |
tttggccttcgcatcaaagagagtgatgatcgtgttgtgcaaagacgggaa---actcattcccatgtaaatgattctgatgtgataggaagggaacaag |
154 |
Q |
| |
|
|||||||||| ||||| || |||||| |||||||||| |||| || ||| || ||||| |||| | ||||||||||||||||||||| |||| | |
|
|
| T |
49340387 |
tttggccttcaaatcaatgatagtgataatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattgattctgatgtgataggaagaaaacatg |
49340486 |
T |
|
| Q |
155 |
ataaacagaaaattgtagaactcttattcgacgatagtgatgataaaaat---ctatctgttgttgctattgtgggacttggaggtatgggaaagactac |
251 |
Q |
| |
|
||||||| ||||| | | || ||||| | ||||||| ||||| ||| || |||||| || ||||||| ||| ||||||| | ||||| ||||| |
|
|
| T |
49340487 |
ataaacaaaaaatcattaatctgttattgcaagatagtggtgatagtaatagtctctctgttattcctattgttggaattggaggattaggaaaaactac |
49340586 |
T |
|
| Q |
252 |
acttgcaaaagctgtgtttaatgataagagtgtagttgactcttttccattaaagatgtggatatgcgtctcggatgattttgatgttaagaatctgctt |
351 |
Q |
| |
|
||||||||| | |||||||||||||||||| ||| ||| |||||||||| ||||||||| | || ||||| ||||||||||| || ||||||||||| |
|
|
| T |
49340587 |
acttgcaaaggtcgtgtttaatgataagagtttagatgagacttttccattgaagatgtgggtgtgtgtctctgatgattttgaacttgagaatctgctt |
49340686 |
T |
|
| Q |
352 |
gttaa |
356 |
Q |
| |
|
||||| |
|
|
| T |
49340687 |
gttaa |
49340691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 312
Target Start/End: Original strand, 19030337 - 19030421
Alignment:
| Q |
228 |
acttggaggtatgggaaagactacacttgcaaaagctgtgtttaatgataagagtgtagttgactcttttccattaaagatgtgg |
312 |
Q |
| |
|
||||||||| | ||||| |||||||||||||| || |||||||||| ||||||| ||| ||| |||||||||| ||||||||| |
|
|
| T |
19030337 |
acttggaggattaggaaaaactacacttgcaaaggcagtgtttaatgttaagagtttagatgagacttttccattgaagatgtgg |
19030421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 58 - 356
Target Start/End: Complemental strand, 32784524 - 32784220
Alignment:
| Q |
58 |
tttggccttcgcatcaaagagagtgatgatcgtgttgtgcaaagacgggaa---actcattcccatgtaaatgattctgatgtgataggaagggaacaag |
154 |
Q |
| |
|
|||||||||| ||||| || |||||| | |||||||| ||||||| ||| || ||||| |||| ||||||||||||||||||||||| |||| | |
|
|
| T |
32784524 |
tttggccttcaaatcaatgatagtgataaccgtgttgtaaaaagacgtgaattgacacattcatatgtgaatgattctgatgtgataggaagaaaacatg |
32784425 |
T |
|
| Q |
155 |
ataaacagaaaattgtagaactcttattcgacgatagtgatga---taaaaatctatctgttgttgctattgtgggacttggaggtatgggaaagactac |
251 |
Q |
| |
|
||||||| ||||| | | | ||||| ||||||| ||| ||| | ||| |||||| || ||||||| ||| ||||||| | ||||| ||||| |
|
|
| T |
32784424 |
ataaacaaaaaatcattaatcagttattgctagatagtggtgatagtaatagtctctctgttattcctattgttggaattggaggattaggaaaaactac |
32784325 |
T |
|
| Q |
252 |
acttgcaaaagctgtgtttaatgataagagtgtagttgactcttttccattaaagatgtggatatgcgtctcggatgattttgatgttaagaatctgctt |
351 |
Q |
| |
|
|||| |||| || |||||||||||||||||| ||| ||| ||||| |||| ||||||||| | || ||||| |||||||||| |||||||||||||| |
|
|
| T |
32784324 |
actttcaaaggcagtgtttaatgataagagtttagatgagactttttcattgaagatgtgggtttgtgtctctgatgattttggacttaagaatctgctt |
32784225 |
T |
|
| Q |
352 |
gttaa |
356 |
Q |
| |
|
|||| |
|
|
| T |
32784224 |
cttaa |
32784220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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