View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8046_high_2 (Length: 380)
Name: NF8046_high_2
Description: NF8046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8046_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 5520856 - 5520504
Alignment:
| Q |
17 |
agatttcaggtgcaacttattgtgatggaatatgtgactttgaaagggaggggtccaaatataaaattgtaaaatgttgtagtaaagagaagaaaagtaa |
116 |
Q |
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| T |
5520856 |
agatttcaggtgcaacttattgtgatggaatatgtgactttgaaagggaggggtccaaatataaaattgtaaaatgttgtattaaagagaagaaaagtaa |
5520757 |
T |
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| Q |
117 |
accaacaagaaagctgaaaatggattttggttctgtagatttcactgatgattatcatggaccaaggcaccaccttccaaaacataactgagtgaaaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5520756 |
accaacaagaaagctgaaaatggattttggttctgtagatttcactgatgattatcatggaccaaggcaccaccttccaaaacataactgagtgaaaaat |
5520657 |
T |
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| Q |
217 |
aaagcatttgtgagtgaatctcctagctagctatagcttcatcagtgtaggaatagaaattaannnnnnngcacatcacaagtatataatacaatatact |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5520656 |
aaagcatttgtgagtgaatctcctagctagctatagcttcatcagtgtaggaatagaaattaatttttttgcacatcacaagtatataatacaatatact |
5520557 |
T |
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| Q |
317 |
ttggcaattaattttctagactatgaaaaggtccattaatattttagtatatt |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5520556 |
ttggcaattaattttctagactatgaaaaggtccattaatattctagtatatt |
5520504 |
T |
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