View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8046_high_8 (Length: 302)

Name: NF8046_high_8
Description: NF8046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8046_high_8
NF8046_high_8
[»] chr4 (2 HSPs)
chr4 (101-283)||(53239626-53239808)
chr4 (1-35)||(53239874-53239908)
[»] chr1 (5 HSPs)
chr1 (101-287)||(28851722-28851907)
chr1 (111-283)||(21401729-21401900)
chr1 (101-202)||(39482204-39482305)
chr1 (215-283)||(2170742-2170810)
chr1 (101-152)||(2170793-2170844)
[»] chr8 (2 HSPs)
chr8 (101-202)||(31371648-31371749)
chr8 (101-287)||(34872290-34872458)
[»] chr6 (1 HSPs)
chr6 (101-202)||(10461400-10461501)
[»] chr7 (5 HSPs)
chr7 (101-202)||(32248428-32248529)
chr7 (101-195)||(47814910-47815004)
chr7 (101-187)||(33427121-33427207)
chr7 (101-171)||(37502904-37502974)
chr7 (192-242)||(37502975-37503025)
[»] chr2 (1 HSPs)
chr2 (105-242)||(18748882-18749022)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 101 - 283
Target Start/End: Complemental strand, 53239808 - 53239626
Alignment:
Q  101 aatcaaaacaaaaccaaatcattaaccaccatcacaattttctctccaacattcatcatctgaaacgtaacctcctctttttctttctgggaacacaaaa 200  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  53239808 aatcaaaataaaaccaaatcattaaccaccgtcacaattttctctccaacattcatcatctgaaacgtagcctcctctttttctttctgggaacacaaaa 53239709  T
Q  201 cttcatatatgtaccaattttgtctcaaacatctttgaacaaggctttctttagtaacattctttctcactcagatactatat 283  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||  |||||| ||||||||||    
T  53239708 cttcatatatgtaccaattttgtctcaaacatctttgaacaaggtttcctttaataacattcttattcactctgatactatat 53239626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 53239908 - 53239874
Alignment:
Q  1 ttgacttaagagaaaaagttttggtacacttctat 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  53239908 ttgacttaagagaaagagttttggtacacttctat 53239874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 101 - 287
Target Start/End: Complemental strand, 28851907 - 28851722
Alignment:
Q  101 aatcaaaacaaaaccaaatcattaaccaccatcacaattttctctccaacattcatcatctgaaacgtaacctcctctttttctttctgggaacacaaaa 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||| |||||||||||||    
T  28851907 aatcaaaacaaaaccaaatcattaaccactatcacaattttctctccaacatttatcat-tgaaacgtaaactcctctttttctttttgggaacacaaaa 28851809  T
Q  201 cttcatatatgtaccaattttgtctcaaacatctttgaacaaggctttctttagtaacattctttctcactcagatactatatatgt 287  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  28851808 cttcatatatgtaccaattttatctcaaacatctttaaacaaggcttcctttaataacattctttctcactcagatactatatatgt 28851722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 111 - 283
Target Start/End: Original strand, 21401729 - 21401900
Alignment:
Q  111 aaaccaaatcattaaccaccatcacaattttctctccaacattcatcatctgaaacgtaacctcctcttttt-ctttctgggaacacaaaacttcatata 209  Q
    ||||||||||||||||   |||||||||||||| |||||| |||||||||| ||| ||||| |||||||||| |||| | ||||||||||||||||| ||    
T  21401729 aaaccaaatcattaactgtcatcacaattttctttccaaccttcatcatcttaaatgtaacttcctctttttcctttttaggaacacaaaacttcatcta 21401828  T
Q  210 tgtaccaattttgtctcaaacatctttgaacaaggctttctttagtaacattctttctcactcagatactatat 283  Q
      ||| ||||||||||||||||| |||| |||| |||| ||||| || ||||||||||||||| | ||||||||    
T  21401829 --tacgaattttgtctcaaacatatttgtacaaagcttcctttaatagcattctttctcactctgctactatat 21401900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 39482204 - 39482305
Alignment:
Q  101 aatcaaaacaaaaccaaatcattaaccaccatcacaattttctctccaacattcatcatctgaaacgtaacctcctctttttctttctgggaacacaaaa 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||| || |||||| ||||||| || ||||||| |||||||||||||| ||||||||||    
T  39482204 aatcaaaacaaaaccaaatcattaaccaccattacaattttctcttcatcattcaacatctgagacttaacctcatctttttctttctgcgaacacaaaa 39482303  T
Q  201 ct 202  Q
    ||    
T  39482304 ct 39482305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 2170810 - 2170742
Alignment:
Q  215 caattttgtctcaaacatctttgaacaaggctttctttagtaacattctttctcactcagatactatat 283  Q
    ||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  2170810 caattttctctcaaacatctttgaacaaggcttcctttaataacattctttctcactcagatactatat 2170742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 2170844 - 2170793
Alignment:
Q  101 aatcaaaacaaaaccaaatcattaaccaccatcacaattttctctccaacat 152  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  2170844 aatcaaaataaaaccaaatcattaaccaccatcacaattttctctcaaacat 2170793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 31371648 - 31371749
Alignment:
Q  101 aatcaaaacaaaaccaaatcattaaccaccatcacaattttctctccaacattcatcatctgaaacgtaacctcctctttttctttctgggaacacaaaa 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||| ||||||||||||||    
T  31371648 aatcaaaacaaaatcaaatcattaaccaccatcacaattttctctccaacattcatcatctgtaaggtaacctcctttttttcttgctgggaacacaaaa 31371747  T
Q  201 ct 202  Q
    ||    
T  31371748 ct 31371749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 101 - 287
Target Start/End: Original strand, 34872290 - 34872458
Alignment:
Q  101 aatcaaaacaaaaccaaatcattaaccaccatcacaattttctctccaacattcatcatctgaaacgtaacctcctctttttctttctgggaacacaaaa 200  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |              ||||||| ||| |||||||||||||    
T  34872290 aatcaaaacaaaatcaaatcattaaccgccatcacaattttctctccaacattcatcattt--------------tctttttatttttgggaacacaaaa 34872375  T
Q  201 cttcatatatgtaccaattttgtctcaaacatctttgaacaaggctttctttagtaacattctttctcactcagatactatatatgt 287  Q
    ||||     |||| ||||||||||||||||||||||||||||   || ||||| |||||||||||||| || || || |||||||||    
T  34872376 cttc----ttgtatcaattttgtctcaaacatctttgaacaaaatttcctttaataacattctttctctctaaggtattatatatgt 34872458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 10461501 - 10461400
Alignment:
Q  101 aatcaaaacaaaaccaaatcattaaccaccatcacaattttctctccaacattcatcatctgaaacgtaacctcctctttttctttctgggaacacaaaa 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  10461501 aatcaaaacaaaaccaaatcattaaccaccattacaattttctcttcatcatacatcatctgaaacttaacctcctctttttctttctgggaacacaaaa 10461402  T
Q  201 ct 202  Q
    ||    
T  10461401 ct 10461400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 32248428 - 32248529
Alignment:
Q  101 aatcaaaacaaaaccaaatcattaaccaccatcacaattttctctccaacattcatcatctgaaacgtaacctcctctttttctttctgggaacacaaaa 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||| |||| |||||||||||||||| |||||||||||    
T  32248428 aatcaaaacaaaaccaaatcattaaccaccattacaattttctcttcatcattcatcatctgaaacttaacttcctctttttctttctaggaacacaaaa 32248527  T
Q  201 ct 202  Q
    ||    
T  32248528 ct 32248529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 47814910 - 47815004
Alignment:
Q  101 aatcaaaacaaaaccaaatcattaaccaccatcacaattttctctccaacattcatcatctgaaacgtaacctcctctttttctttctgggaaca 195  Q
    |||||||||||||||||||||||||    |||| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| |||||||    
T  47814910 aatcaaaacaaaaccaaatcattaattgtcatcgcaattttctctccaacattcatcttctcaaacgtaaccttctctttttctttccgggaaca 47815004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 187
Target Start/End: Complemental strand, 33427207 - 33427121
Alignment:
Q  101 aatcaaaacaaaaccaaatcattaaccaccatcacaattttctctccaacattcatcatctgaaacgtaacctcctctttttctttc 187  Q
    ||||||||||||||||||||||||||   |||| ||||||||||||||||||||||| ||| |||||||| || |||||||||||||    
T  33427207 aatcaaaacaaaaccaaatcattaacggtcatcgcaattttctctccaacattcatcttctcaaacgtaatcttctctttttctttc 33427121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 37502904 - 37502974
Alignment:
Q  101 aatcaaaacaaaaccaaatcattaaccaccatcacaattttctctccaacattcatcatctgaaacgtaac 171  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||| |||| ||||    
T  37502904 aatcaaaacaaagccaaatcattaaccgccatcacaattttctctccaaccttcatcatctcaaacataac 37502974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 37502975 - 37503025
Alignment:
Q  192 aacacaaaacttcatatatgtaccaattttgtctcaaacatctttgaacaa 242  Q
    ||||||||||||||| |||||||||||||  ||||||||||||||||||||    
T  37502975 aacacaaaacttcatctatgtaccaatttcatctcaaacatctttgaacaa 37503025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 105 - 242
Target Start/End: Original strand, 18748882 - 18749022
Alignment:
Q  105 aaaacaaaaccaaatcattaaccaccatcacaattttct-ctccaaca-ttcatcatctgaaacgtaacctcctctttttc-tttctgggaacacaaaac 201  Q
    |||||||||| |||| | ||||| || |||||||||| | |||||| | |||||||||| ||| |||||||| |||||||| |||| |||||||||| ||    
T  18748882 aaaacaaaacaaaattaataaccgccttcacaatttttttctccaaaacttcatcatctcaaaagtaacctcttctttttcctttccgggaacacaagac 18748981  T
Q  202 ttcatatatgtaccaattttgtctcaaacatctttgaacaa 242  Q
    ||||  |||||||||||||  |||||||||||||| |||||    
T  18748982 ttcacctatgtaccaatttcatctcaaacatctttaaacaa 18749022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University