View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8046_low_3 (Length: 362)
Name: NF8046_low_3
Description: NF8046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8046_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 28174821 - 28175182
Alignment:
| Q |
1 |
cattgatgcatgtcaaaatcaaattacatttctaacatttctcaagagcaatgctttataaagcaaatattggtataacaaactaatcacaaatcgcttt |
100 |
Q |
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| T |
28174821 |
cattgatgcatgtcaaaatcaaattacatttctaacatttctcaagagcaatgctatataaagcaaatattggtataacaaactaatcacaaatcgcttt |
28174920 |
T |
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| Q |
101 |
tgattgttgaatctcccattagcttgcgttgcagatacagttacaattcaataatcgtgaaatttctgtgatagattttttcgtgaaatagtattttctt |
200 |
Q |
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| T |
28174921 |
tgattgttgaatctcccattagcttgcgttgcagttacagttacaattcaacaatcgtgaaatttctgtgatagattttttcgtgaaatagtattttctt |
28175020 |
T |
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| Q |
201 |
tttcaaaagcatctacacttctcattcctcaacattttcaccaaaaacatgtcattcatgagaatccacgatatttcttaaaaatatggatttgacattt |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
28175021 |
tttcaaaagcatccacacttctcattcctcaacattttcaccaaaaacatgtcattcatgagaatccacgatatttcttaaaaacatgggtttgacattt |
28175120 |
T |
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| Q |
301 |
gtttttgtatattacaatgactaaatcacaacaaccaatcataagaccacatttgaatgtga |
362 |
Q |
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| T |
28175121 |
gtttttgtatattacaatgactaaatcacaacaaccaatcataagaccacatttgaatgtga |
28175182 |
T |
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