View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8046_low_6 (Length: 320)
Name: NF8046_low_6
Description: NF8046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8046_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 6119648 - 6119937
Alignment:
| Q |
18 |
gttggttcggtctaagaggataacggtgttgaagcgtgttactgttgtgtgcattgaggctatacctgcgttttggactagaagctcccacgtgccgggg |
117 |
Q |
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| T |
6119648 |
gttggttcggtctaagaggataacggtgttgaagcgtgttactgttgtgtgcattgaggctatacctgcgttttggactagaagctcccacgtgccgggg |
6119747 |
T |
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| Q |
118 |
agtgtggcacgtgctgattttgggaatgtgaagagaagtatgagaaagcatatcacaaagagaggaatggtttccattgaagattagagataagagtagt |
217 |
Q |
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| T |
6119748 |
agggtggcacgtgtgggagtttggaatgtgaagagttgtatgagaaagcatatcacaaagagaggaatggtttccattgaagattagagataagagtagt |
6119847 |
T |
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| Q |
218 |
gagtggaagtgaagtgaagtgtggtgttggagaaggttctataaagaatgagaattaattaaagtggaaattgtaatgaaaagtgtaagtataat |
312 |
Q |
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| T |
6119848 |
gagtg-----gaagtgaagtgtggtgttggagaaggttctataaagaatgagaattaattaaagtggaaattgtaatgaaaagtgtaagtataat |
6119937 |
T |
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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 302
Target Start/End: Complemental strand, 6117190 - 6117115
Alignment:
| Q |
228 |
gaagtgaagtgtggtgtt-----ggagaaggttctataaagaatgagaattaattaaagtggaaattgtaatgaaaagtg |
302 |
Q |
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| T |
6117190 |
gaagtgaagtgtggtgttaagctggggaagcttctataaagaatgagaattgat----gtggaaattgtaatgaaaagtg |
6117115 |
T |
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