View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8047_high_10 (Length: 351)
Name: NF8047_high_10
Description: NF8047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8047_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 39 - 336
Target Start/End: Original strand, 10850707 - 10851004
Alignment:
| Q |
39 |
ttctttggaggagattgttgttaaggaagggcaagcaaattttaataaggttgagtttaataagttacgctctttaacactacaatcgttaccattattt |
138 |
Q |
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| T |
10850707 |
ttctttggaggagattgttgttaaggaagggcaagcaaattttaataaggttgagtttaataagctacgctctttaacactacaatcgttaccattattt |
10850806 |
T |
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| Q |
139 |
actagtttttatacctgtgttgagatgccctcggcagaagagcaaataacaaaaagggatcacatagaaattactgttgcagaagatgatcacagtgtca |
238 |
Q |
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| T |
10850807 |
actagtttttatacctgtgttgagatgccctctacagaagagcaaataacaaaaagagatcacatagaaattactgttgcagaagatgatcacagtgtca |
10850906 |
T |
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| Q |
239 |
tggatcccctttcactctttggtgaactggtatgatattgcataatatccctcctgtttttgttgatttgtgatttctctctctctttcacttgatac |
336 |
Q |
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| T |
10850907 |
tggatcccctttcactctttggtgaactggtatgatattgcataatatccctcctgtttttgttgatttgtgatttttctctctctttcacttgatac |
10851004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 39 - 286
Target Start/End: Original strand, 10882141 - 10882373
Alignment:
| Q |
39 |
ttctttggaggagattgttgttaaggaagggcaagcaaattttaataaggttgagtttaataagttacgctctttaacactacaatcgttaccattattt |
138 |
Q |
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| T |
10882141 |
ttctttgaaggagattgttgctaaggaaggaaaagaagattttaataaggttgagtttcataagctacgctctttgacactataatcgttaccatcattt |
10882240 |
T |
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| Q |
139 |
actagtttttatacctgtgttgagatgccctcggcagaagagcaaataacaaaaagggatcacatagaaattactgttgcagaagatgatcacagtgtca |
238 |
Q |
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| T |
10882241 |
actagtttttatacccatgatgagatgctctctgtagaagagcaaacaacaa---------------aaaatactgttgcagaaaatgatgacagtgtcg |
10882325 |
T |
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| Q |
239 |
tggatcccctttcactctttggtgaactggtatgatattgcataatat |
286 |
Q |
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| T |
10882326 |
tggattccctttcactctttgatgatctggtatgatactgcaaaatat |
10882373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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