View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8047_high_11 (Length: 342)
Name: NF8047_high_11
Description: NF8047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8047_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 6 - 318
Target Start/End: Original strand, 23495675 - 23495987
Alignment:
| Q |
6 |
gcatctccaataatattcttaagtgagttcttagatttaagaatcgattattcctgagttatacaattggattatgttaacatggattctagccgtgaga |
105 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23495675 |
gcatctccaacagtattcttaagtgagttcttagatttaagaatcgattattcctgagttatacaattggagcatgttaacatggattctagccgtgaga |
23495774 |
T |
|
| Q |
106 |
acgatacgagagttttgttctttgcannnnnnnctcactcatcagagccaataatattacatttgatgtagatgtagacatgtaataacctcccttttca |
205 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23495775 |
acgatacgagagttttgttctttgcatttttttttcactcatcagagccaataatattacatttgatgtagatgtagacatgtaataacctcccttttca |
23495874 |
T |
|
| Q |
206 |
ccaatgaagatgctcaagcagacatgtgataataaacaagtcctatatcaaataatgattcatttcagcatggtcatgtatttcaccatctcattctatc |
305 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23495875 |
ccaatgaagatgcttaagcagacatgtaataataaacaagtcctatatcaaatactgattcatttcagcatggtcatgtatttcaccatctcattctatc |
23495974 |
T |
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| Q |
306 |
taaaggtccaaaa |
318 |
Q |
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||||||||||||| |
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| T |
23495975 |
taaaggtccaaaa |
23495987 |
T |
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