View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8047_high_14 (Length: 303)
Name: NF8047_high_14
Description: NF8047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8047_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 42997951 - 42997680
Alignment:
| Q |
1 |
taagtaacaaccattaggcaagaaagaggattaaacctccaataattgtagtcaaaatcaaacatagcgtatgtcatttaaaccaccaaaaagatgaagt |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42997951 |
taagtaacagccattaggcaagaaagaggattaaacctccaataattatagtcaaaatcaaacatagcgtatgtcatttaaaccactaaaaagatgaagt |
42997852 |
T |
|
| Q |
101 |
ttaacattttcgcctaaagattgaatatctttctccttttattgaaa-ttgtgtttatttctttctttttaagttatctacactcgtgaaagccatgtta |
199 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||| |
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| T |
42997851 |
ttaatattttcgcttaaagattgaatatctttctccttttattgaaacatgtgtttatttctttctttttaacttatctacactcgtgaaagctatatta |
42997752 |
T |
|
| Q |
200 |
tgttgaatgccttttaactacaaaatatggctattagcaattaagtcattatcataaaattcatgaccatct |
271 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42997751 |
tgttgtatgcctttcaactacaaaatatggctattagcaattaactcattatcataaaattcatgaccatct |
42997680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 4154902 - 4154778
Alignment:
| Q |
1 |
taagtaacaaccattaggcaagaaagaggattaaacctccaataattgtagtcaaaatcaaacatagcgtatgtc-atttaaaccacca-aaaagatgaa |
98 |
Q |
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||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||| ||||| |
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| T |
4154902 |
taagtaacaaccattggtcaagaaggaggattaaacctccaataattgtagtcaaaatcaaacatagcatatgtcgatttaaaccaccagaaaacatgaa |
4154803 |
T |
|
| Q |
99 |
gtttaacattttcgcctaaagattg |
123 |
Q |
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| T |
4154802 |
gcttaacatttatgcctaaagattg |
4154778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 24430308 - 24430244
Alignment:
| Q |
1 |
taagtaacaaccattaggcaagaaagaggattaaacctccaataattgtagtcaaaatcaaacat |
65 |
Q |
| |
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|||| |||||||||||| |||||||| |||||| ||| |||||||| ||||||||||||||||| |
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|
| T |
24430308 |
taaggaacaaccattagataagaaagatgattaagccttcaataattatagtcaaaatcaaacat |
24430244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 39698417 - 39698377
Alignment:
| Q |
19 |
caagaaagaggattaaacctccaataattgtagtcaaaatc |
59 |
Q |
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|
| T |
39698417 |
caagaaagagtattaagcctccaataattgtagtcaaaatc |
39698377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 4075923 - 4075859
Alignment:
| Q |
29 |
gattaaacctccaataattgtagtcaaaatcaaacatagcgtatgtc-atttaaaccaccaaaaa |
92 |
Q |
| |
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|||||| |||||||||| |||||||||||||||||| || |||||| |||| |||||| ||||| |
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| T |
4075923 |
gattaagcctccaataagtgtagtcaaaatcaaacacagtatatgtcgattttaaccacaaaaaa |
4075859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 17265278 - 17265364
Alignment:
| Q |
7 |
acaaccattaggcaagaaagaggattaaacctccaataattgtagtcaaaatcaaacatagcgtatgtc-atttaaaccaccaaaaag |
93 |
Q |
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|||||| | |||||| ||||||||||| |||||||||| ||||||||||||| |||||||| |||||| |||| |||||||| |||| |
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| T |
17265278 |
acaaccttaaggcaacgaagaggattaagcctccaataagtgtagtcaaaatc-aacatagcatatgtcgattttaaccaccagaaag |
17265364 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 21138339 - 21138272
Alignment:
| Q |
1 |
taagtaacaaccattaggcaagaaagaggattaaacctccaataattgtagtcaaaatcaaacatagc |
68 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||| || |||| ||||||| ||||||| ||| ||||| |
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|
| T |
21138339 |
taagttacaacaattagacaagaaagaggattaagcccccaaaaattgtaatcaaaataaaaaatagc |
21138272 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 34551242 - 34551390
Alignment:
| Q |
1 |
taagtaacaaccattaggcaagaaagaggattaaacctccaataattgtagtcaaaatcaaacat-agcgtatgtc-atttaaaccacc-aaaaagatga |
97 |
Q |
| |
|
||||| |||||| |||| ||||||| || ||||| ||| || ||||||||||||||||||||||| || | ||||| | |||||||||| | | |||| |
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| T |
34551242 |
taagttacaacccttagacaagaaaaag-attaagcctacagtaattgtagtcaaaatcaaacatgagag-atgtcaaattaaaccacctgtatacatga |
34551339 |
T |
|
| Q |
98 |
agtttaacattttcgcctaaagattgaatatctttctccttttattgaaat |
148 |
Q |
| |
|
|||||||| ||||||| |||||| | |||||||| |||||| | ||||||| |
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|
| T |
34551340 |
agtttaaccttttcgcttaaagaattaatatcttcctccttatgttgaaat |
34551390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 2856569 - 2856738
Alignment:
| Q |
1 |
taagtaacaaccattaggcaagaaagaggattaaacctccaataattgtagtcaaaatcaaacatagcgtatgtc-atttaaaccaccaaaaag-atgaa |
98 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||||| |||||||| ||||||||||||| ||||| |||||| |||||||||| | || | ||||| |
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| T |
2856569 |
taagttacaacggttaagcaagaaagaggattaagtttccaataagtgtagtcaaaatcgaacatcatatatgtcgatttaaaccattagaatgcatgaa |
2856668 |
T |
|
| Q |
99 |
gtttaacattttcgcctaaagattgaatatctttctccttttattgaaat-tgtgtttatttctttcttt |
167 |
Q |
| |
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||||| ||||||| |||||| ||||| ||||||||| | |||||| ||||||||||||| ||||| |
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|
| T |
2856669 |
acttaacgttttcgcttaaagaaataatatttttctccttatgctgaaatatgtgtttatttctctcttt |
2856738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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