View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8047_high_5 (Length: 425)

Name: NF8047_high_5
Description: NF8047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8047_high_5
NF8047_high_5
[»] chr5 (1 HSPs)
chr5 (18-403)||(11634900-11635285)
[»] chr3 (13 HSPs)
chr3 (255-395)||(30227292-30227432)
chr3 (245-395)||(30201117-30201267)
chr3 (254-395)||(29856790-29856931)
chr3 (247-395)||(29648978-29649126)
chr3 (262-310)||(30239063-30239111)
chr3 (271-395)||(30214664-30214787)
chr3 (107-201)||(29856996-29857090)
chr3 (255-308)||(29751882-29751935)
chr3 (248-296)||(30223140-30223188)
chr3 (249-297)||(36333932-36333980)
chr3 (247-284)||(29713035-29713072)
chr3 (247-296)||(30230381-30230430)
chr3 (249-297)||(36313855-36313903)
[»] chr6 (2 HSPs)
chr6 (256-395)||(5569421-5569560)
chr6 (272-395)||(5574415-5574538)
[»] chr8 (1 HSPs)
chr8 (254-308)||(1152919-1152973)
[»] chr7 (2 HSPs)
chr7 (249-310)||(16644731-16644792)
chr7 (249-310)||(17619092-17619153)
[»] chr1 (1 HSPs)
chr1 (262-298)||(16955668-16955704)


Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 11635285 - 11634900
Alignment:
Q  18 cataaaaatttagaaaataaatcatggatgataaaacaatataagcaattgaaatatatacaagaaaaaagattcttttatcaattattattacttctca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11635285 cataaaaatttagaaaataaatcatggatgataaaacaatatacgcaattgaaatatatacaagaaaaaagattcttttatcaattattattacttctca 11635186  T
Q  118 actatgaattcaaggagctcatctgtggcaaaatactcaacagaaatctcttctaaatgaccgcagcttcgttcaacagcataatgacagatctctggca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11635185 actatgaattcaaggagctcatctgtggcaaaatactcaacagaaatctcttctaaatgaccgcagcttcgttcaacagcataatgacagatctctggga 11635086  T
Q  218 aatttgcattaaagtaactgcaatcacctatcatgcgaatggtacgccacatgagaggatccttgcatatgttccaccatagaggacaaactatacatgc 317  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  11635085 aatttgcattaaagtaactgcgttcacctatcatgcgaatggtacgccacatgagaggatccttgcatatgctccaccatagaggacatactatacatgc 11634986  T
Q  318 cttttctactatatcaatggtataaagcctctgaagaatgtttcttatgatgtctgtcggaagttcaagccaatttggtactgttg 403  Q
     |||| |||||| |||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11634985 attttttactatgtcaatggtatcaagcctccgaagaatgtttgttatgatgtctgtcggaagttcaagccaatttggtactgttg 11634900  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 255 - 395
Target Start/End: Complemental strand, 30227432 - 30227292
Alignment:
Q  255 aatggtacgccacatgagaggatccttgcatatgttccaccatagaggacaaactatacatgc-cttttctactatatcaatggtataaagcctctgaag 353  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||||||| |||  |||||| ||| || || || || ||||||  |||||| |||||    
T  30227432 aatggtgcgccacatgagaggatccttgcaaatgttccactatagaggacacacttgacatgcacttgtc-acaatctcgatggtaccaagcctttgaag 30227334  T
Q  354 aatgtttcttatgatgtctgtcggaagttcaagccaatttgg 395  Q
    ||||||| || |||||||| | ||||||||||||||||||||    
T  30227333 aatgtttgttgtgatgtctctaggaagttcaagccaatttgg 30227292  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 245 - 395
Target Start/End: Complemental strand, 30201267 - 30201117
Alignment:
Q  245 ctatcatgcgaatggtacgccacatgagaggatccttgcatatgttccaccatagaggacaaactatacatgc-cttttctactatatcaatggtataaa 343  Q
    |||||||  |||||||  |||||||||||||||||||||| |||||||||||||||||||| |||  |||||| ||| || || || |||||||||  ||    
T  30201267 ctatcatatgaatggtgtgccacatgagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtc-acaatttcaatggtactaa 30201169  T
Q  344 gcctctgaagaatgtttcttatgatgtctgtcggaagttcaagccaatttgg 395  Q
    |||| ||||||||||||  | | |||||| | ||||||||||||||||||||    
T  30201168 gcctttgaagaatgttttctgtaatgtctttaggaagttcaagccaatttgg 30201117  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 395
Target Start/End: Complemental strand, 29856931 - 29856790
Alignment:
Q  254 gaatggtacgccacatgagaggatccttgcatatgttccaccatagaggacaaactatacatgc-cttttctactatatcaatggtataaagcctctgaa 352  Q
    ||||||||||||||| ||||||||| || ||||||| |||||||||||||||||||  |||||| |||||| || || ||||| |||| |||||| ||||    
T  29856931 gaatggtacgccacaggagaggatctttacatatgtcccaccatagaggacaaacttgacatgcacttttc-acgatttcaattgtatcaagcctttgaa 29856833  T
Q  353 gaatgtttcttatgatgtctgtcggaagttcaagccaatttgg 395  Q
    | ||||||  | |||| ||| || |||||||||||||||||||    
T  29856832 ggatgtttgctgtgatttctctcagaagttcaagccaatttgg 29856790  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 247 - 395
Target Start/End: Complemental strand, 29649126 - 29648978
Alignment:
Q  247 atcatgcgaatggtacgccacatgagaggatccttgcatatgttccaccatagaggacaaactatacatgccttttctactatatcaatggtataaagcc 346  Q
    |||||| |||||||||||||||||||||||||||| || ||||||||| |||||||||| ||||  ||||| |||  ||| || ||||  |||| ||  |    
T  29649126 atcatgtgaatggtacgccacatgagaggatccttacaaatgttccacgatagaggacatactaggcatgcatttgttacaatttcaacagtatcaactc 29649027  T
Q  347 tctgaagaatgtttcttatgatgtctgtcggaagttcaagccaatttgg 395  Q
      ||||| |||||  || |||||||| | ||||||||||||||||||||    
T  29649026 cttgaaggatgttaattgtgatgtctcttggaagttcaagccaatttgg 29648978  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 30239111 - 30239063
Alignment:
Q  262 cgccacatgagaggatccttgcatatgttccaccatagaggacaaacta 310  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30239111 cgccacatgagaggatccttgcatatgttccaccatagaggacatacta 30239063  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 395
Target Start/End: Complemental strand, 30214787 - 30214664
Alignment:
Q  271 agaggatccttgcatatgttccaccatagaggacaaactatacatgc-cttttctactatatcaatggtataaagcctctgaagaatgtttcttatgatg 369  Q
    |||||||||||||| |||||||||||||||||||| |||  |||||| ||| || || || |||||||||  ||| || |||| ||||||| || |||||    
T  30214787 agaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtc-acaatctcaatggtaccaagtctttgaa-aatgtttgttgtgatg 30214690  T
Q  370 tctgtcggaagttcaagccaatttgg 395  Q
    ||| | ||||||||||||||||||||    
T  30214689 tctctaggaagttcaagccaatttgg 30214664  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 201
Target Start/End: Complemental strand, 29857090 - 29856996
Alignment:
Q  107 attacttctcaactatgaattcaaggagctcatctgtggcaaaatactcaacagaaatctcttctaaatgaccgcagcttcgttcaacagcataa 201  Q
    ||||||||||| |||||||||||||||| ||||| ||  || ||||||||| |   || ||||| | ||||||||| ||||||||||||||||||    
T  29857090 attacttctcagctatgaattcaaggagttcatcagttacagaatactcaatattgatgtcttcaagatgaccgcaacttcgttcaacagcataa 29856996  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 29751935 - 29751882
Alignment:
Q  255 aatggtacgccacatgagaggatccttgcatatgttccaccatagaggacaaac 308  Q
    |||||||| ||||||||||||||||||||| | ||||||||| |||||||||||    
T  29751935 aatggtactccacatgagaggatccttgcaaacgttccaccaaagaggacaaac 29751882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 30223188 - 30223140
Alignment:
Q  248 tcatgcgaatggtacgccacatgagaggatccttgcatatgttccacca 296  Q
    ||||| ||||||| ||||||||||||||||||||||| |||||||||||    
T  30223188 tcatgtgaatggtgcgccacatgagaggatccttgcaaatgttccacca 30223140  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 36333932 - 36333980
Alignment:
Q  249 catgcgaatggtacgccacatgagaggatccttgcatatgttccaccat 297  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  36333932 catgcgaatagtgcgccacatgagaggatccttgcaaatgttccaccat 36333980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 29713072 - 29713035
Alignment:
Q  247 atcatgcgaatggtacgccacatgagaggatccttgca 284  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  29713072 atcatgtgaatggtacgccacattagaggatccttgca 29713035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 30230430 - 30230381
Alignment:
Q  247 atcatgcgaatggtacgccacatgagaggatccttgcatatgttccacca 296  Q
    |||||| ||||||| ||||||||| ||||||||||||| ||| |||||||    
T  30230430 atcatgtgaatggtgcgccacatgcgaggatccttgcaaatgctccacca 30230381  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 36313855 - 36313903
Alignment:
Q  249 catgcgaatggtacgccacatgagaggatccttgcatatgttccaccat 297  Q
    ||||||||| || ||||||||||||||||||||||| || ||| |||||    
T  36313855 catgcgaatagtgcgccacatgagaggatccttgcaaatcttcaaccat 36313903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 256 - 395
Target Start/End: Original strand, 5569421 - 5569560
Alignment:
Q  256 atggtacgccacatgagaggatccttgcatatgttccaccatagaggacaaactatacatgccttttctactatatcaatggtataaagcctctgaagaa 355  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||||| |||  ||||||  ||  ||||| |||||| |||| |||||| ||||| |    
T  5569421 atggtacgccacacaagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgttactacatcaatagtatcaagcctttgaagga 5569520  T
Q  356 tgtttcttatgatgtctgtcggaagttcaagccaatttgg 395  Q
    ||||     |||||||| | |||||| |||||||||||||    
T  5569521 tgttcaccgtgatgtctcttggaagtgcaagccaatttgg 5569560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 395
Target Start/End: Original strand, 5574415 - 5574538
Alignment:
Q  272 gaggatccttgcatatgttccaccatagaggacaaactatacatgccttttctactatatcaatggtataaagcctctgaagaatgtttcttatgatgtc 371  Q
    ||||||||||||| |||||||||||||||||||| |||  ||||||  ||  ||||| |||||| |||| |||||| ||||| |||||     |||||||    
T  5574415 gaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgttactacatcaatagtatcaagcctttgaaggatgttcaccgtgatgtc 5574514  T
Q  372 tgtcggaagttcaagccaatttgg 395  Q
    | | |||||| |||||||||||||    
T  5574515 tcttggaagtgcaagccaatttgg 5574538  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 1152919 - 1152973
Alignment:
Q  254 gaatggtacgccacatgagaggatccttgcatatgttccaccatagaggacaaac 308  Q
    |||||||||||||||| |||||||||||||| |||| |||||| |||||||||||    
T  1152919 gaatggtacgccacattagaggatccttgcaaatgtgccaccacagaggacaaac 1152973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 16644731 - 16644792
Alignment:
Q  249 catgcgaatggtacgccacatgagaggatccttgcatatgttccaccatagaggacaaacta 310  Q
    |||| ||||||| |||||||||||||| |||||||| |||||||||||||||| ||| ||||    
T  16644731 catgtgaatggtgcgccacatgagaggttccttgcaaatgttccaccatagagcacacacta 16644792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 17619092 - 17619153
Alignment:
Q  249 catgcgaatggtacgccacatgagaggatccttgcatatgttccaccatagaggacaaacta 310  Q
    |||| ||||||| |||||||||||||| |||||||| |||||||||||||||| ||| ||||    
T  17619092 catgtgaatggtgcgccacatgagaggttccttgcaaatgttccaccatagagcacacacta 17619153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 16955668 - 16955704
Alignment:
Q  262 cgccacatgagaggatccttgcatatgttccaccata 298  Q
    ||||||||||||||||||||||| || ||||||||||    
T  16955668 cgccacatgagaggatccttgcaaatattccaccata 16955704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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