View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8047_high_9 (Length: 388)

Name: NF8047_high_9
Description: NF8047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8047_high_9
NF8047_high_9
[»] chr2 (3 HSPs)
chr2 (1-372)||(8020997-8021363)
chr2 (256-370)||(22792281-22792395)
chr2 (320-370)||(22965811-22965861)
[»] chr3 (34 HSPs)
chr3 (1-372)||(28151816-28152183)
chr3 (8-360)||(11421393-11421743)
chr3 (7-370)||(17744109-17744463)
chr3 (7-370)||(19045429-19045783)
chr3 (92-372)||(27920463-27920738)
chr3 (224-372)||(30993721-30993869)
chr3 (224-370)||(27954559-27954705)
chr3 (224-370)||(8538714-8538860)
chr3 (236-363)||(27430588-27430715)
chr3 (6-132)||(28037611-28037737)
chr3 (14-151)||(8539081-8539218)
chr3 (224-363)||(28037895-28038034)
chr3 (224-362)||(28163032-28163170)
chr3 (222-363)||(28479461-28479602)
chr3 (222-363)||(28508644-28508785)
chr3 (88-160)||(27430798-27430870)
chr3 (224-363)||(28057568-28057707)
chr3 (224-363)||(28067993-28068132)
chr3 (224-369)||(18078831-18078976)
chr3 (319-370)||(27458426-27458477)
chr3 (6-80)||(27458741-27458815)
chr3 (299-363)||(26138821-26138885)
chr3 (11-107)||(26139089-26139185)
chr3 (224-363)||(26204229-26204365)
chr3 (8-107)||(28162792-28162891)
chr3 (6-79)||(11421159-11421232)
chr3 (326-363)||(26109937-26109974)
chr3 (6-107)||(26110202-26110303)
chr3 (6-111)||(26127278-26127383)
chr3 (326-363)||(28187144-28187181)
chr3 (89-133)||(18076983-18077027)
chr3 (248-363)||(28136724-28136839)
chr3 (6-111)||(26177328-26177433)
chr3 (35-107)||(26204494-26204566)
[»] scaffold0922 (1 HSPs)
scaffold0922 (6-369)||(1910-2269)
[»] scaffold1142 (1 HSPs)
scaffold1142 (6-97)||(530-621)
[»] scaffold0257 (1 HSPs)
scaffold0257 (248-363)||(19507-19622)


Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 8020997 - 8021363
Alignment:
Q  1 ttttctcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020997 ttttctcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaag 8021096  T
Q  101 accctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcannnnnnnnaaattaattttctagtgctcaaatatgcataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  8021097 accctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcatttttttaaaattaattttctagtgctcaaatatgcataa 8021196  T
Q  201 acattatttcatgtactcgcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttc 300  Q
    ||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8021197 acattatttcatgtactc-----tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttc 8021291  T
Q  301 caagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatccttcatttcttct 372  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8021292 caagaatcatttagctattgagaaattgtctctgttgactgatttccttgttaagcatccttcatttcttct 8021363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 370
Target Start/End: Original strand, 22792281 - 22792395
Alignment:
Q  256 aagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaag 355  Q
    ||||||| |||| ||||||| | ||||||||||| | || || ||| ||||| |||| | |   ||||| ||||||||||||||||||||| ||||||||    
T  22792281 aagttctccttgtattgtcaaatgggagcttgagcaactggtctccgagaattatttggattacgagaacttgtctttgttgactgatttctttgttaag 22792380  T
Q  356 catccttcatttctt 370  Q
     |||| ||| |||||    
T  22792381 tatccatcagttctt 22792395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 370
Target Start/End: Original strand, 22965811 - 22965861
Alignment:
Q  320 gagaaattgtctttgttgactgatttccttgttaagcatccttcatttctt 370  Q
    ||||| ||||||||||||||||||||| |||||||| |||| ||| |||||    
T  22965811 gagaacttgtctttgttgactgatttctttgttaagtatccatcagttctt 22965861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 28151816 - 28152183
Alignment:
Q  1 ttttctcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaag 100  Q
    |||| ||||||||||||||||||||  |||||||||||| ||| ||||||| |||| | |||||| | ||||| ||| | ||||||||||||||||||||    
T  28151816 ttttgtcagtttctctaaatgatgataatgtcatgaaagcaagctcaaatactgaggatcagttttcaaaggatgataacatattagtttccaaatcaag 28151915  T
Q  101 accctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcannnnnnnna-aattaattttctagtgctcaaatatgcata 199  Q
    |||||||||||||| |||||||| |||||||||| || || ||||||||||||| | |            ||||||||| || ||||| |||||||||||    
T  28151916 accctcttctattgcatctcagtttccttcaaagccttctgaaggtattttatttctttgttttatttttaattaatttacttgtgcttaaatatgcata 28152015  T
Q  200 aacattatttcatgtactcgcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagttt 299  Q
    |  ||| |||| | ||||      |||||||| |||||||||| |||||||||||||||||||||||   |||||||  ||||||||||||||||||| |    
T  28152016 attattctttcctatactt-----tcaggggacccttctcaaatagatgaagatttaagttcttcttttgttgtcaccggggagcttgagaatctagtct 28152110  T
Q  300 ccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatccttcatttcttct 372  Q
    |||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  28152111 ccaataatcatttggctattgagaaattgtctttgttgactgacttccttgttaagcatccttcagttcttct 28152183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 8 - 360
Target Start/End: Original strand, 11421393 - 11421743
Alignment:
Q  8 agtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctct 107  Q
    |||||||| ||||||||| | | ||| ||||||||||||||||| |||| |||||||||| | ||| ||||| |||||||||||||||||||||||||||    
T  11421393 agtttctcgaaatgatgatgctttcaagaaagtaagatcaaatactgaggaacagtttcctacggatgatgatatattagtttccaaatcaagaccctct 11421492  T
Q  108 tctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatca------nnnnnnnnaaattaattttctagtgctcaaatatgcataaa 201  Q
    | ||||| |||||||| ||||| |||  ||  | ||||||||||||||| |||              || || ||||| | ||||  ||||||||||||     
T  11421493 tatattgcatctcagtatcctttaaaacctgttgaaggtattttattgcttcagtttatttttaattaattttattttattgtgcataaatatgcataat 11421592  T
Q  202 cattatttcatgtactcgcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaag---ggagcttgagaatctagtt 298  Q
     |||||||| | |||     | |||||||| |||||||||| || |||||||||      ||||||  ||||||||||   |||||||||||||||||||    
T  11421593 tattatttcctatac-----tttcaggggacccttctcaaatagttgaagattt------ttcttgggttgtcacaagggaggagcttgagaatctagtt 11421681  T
Q  299 tccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatcc 360  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||    
T  11421682 tccaagaaccatttggctattgagaacttgtctttgttgactgaattccttgttaagcatcc 11421743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 7 - 370
Target Start/End: Complemental strand, 17744463 - 17744109
Alignment:
Q  7 cagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctc 106  Q
    ||||||||||||||||||| |||||  |||||||||| |||||||||||| | || ||||| ||  | ||||||||||||||||||||||||| ||| ||    
T  17744463 cagtttctctaaatgatgatgatgttgtgaaagtaagctcaaatattgaggatcaatttcctaaaaatgatgaaatattagtttccaaatcaataccatc 17744364  T
Q  107 ttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcannnnnnnnaaattaattttctagtgctcaaatatgcataaacatta 206  Q
    || ||||| ||| |||| |||||||||| |||||  |||||||||||||| |||         |||||||||||| ||||||||||| || |||  |||     
T  17744363 ttgtattgcatcccagtatccttcaaagcctactggaggtattttattgcttcattttatct-aattaattttcttgtgctcaaataggcttaattattc 17744265  T
Q  207 tttcatgtactcgcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaa 306  Q
    |||| | |||     | |||| ||| ||||||||||   | |||||||| ||||||||||   ||||||  |||||||||||  | ||||| ||||||||    
T  17744264 tttcctatac-----tttcagaggacccttctcaaa---aagaagatttcagttcttctttgtttgtcaagagggagcttgatcaactagtctccaagaa 17744173  T
Q  307 tcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatccttcatttctt 370  Q
     ||||| | |  |||||| |||||||| |||||||||||| ||||||||||||||||| |||||    
T  17744172 gcatttcgattatgagaacttgtcttttttgactgatttctttgttaagcatccttcaattctt 17744109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 7 - 370
Target Start/End: Complemental strand, 19045783 - 19045429
Alignment:
Q  7 cagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctc 106  Q
    ||||||||||||||||||| |||||  |||||||||| |||||||||||| | || ||||| ||  | ||||||||||||||||||||||||| ||| ||    
T  19045783 cagtttctctaaatgatgatgatgttgtgaaagtaagctcaaatattgaggatcaatttcctaaaaatgatgaaatattagtttccaaatcaataccatc 19045684  T
Q  107 ttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcannnnnnnnaaattaattttctagtgctcaaatatgcataaacatta 206  Q
    || ||||| ||| |||| |||||||||| |||||  |||||||||||||| |||         |||||||||||| ||||||||||| || |||  |||     
T  19045683 ttgtattgcatcccagtatccttcaaagcctactggaggtattttattgcttcattttatct-aattaattttcttgtgctcaaataggcttaattattc 19045585  T
Q  207 tttcatgtactcgcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaa 306  Q
    |||| | |||     | |||| ||| ||||||||||   | |||||||| ||||||||||   ||||||  |||||||||||  | ||||| ||||||||    
T  19045584 tttcctatac-----tttcagaggacccttctcaaa---aagaagatttcagttcttctttgtttgtcaagagggagcttgatcaactagtctccaagaa 19045493  T
Q  307 tcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatccttcatttctt 370  Q
     ||||| | |  |||||| |||||||| |||||||||||| ||||||||||||||||| |||||    
T  19045492 gcatttcgattatgagaacttgtcttttttgactgatttctttgttaagcatccttcaattctt 19045429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 92 - 372
Target Start/End: Original strand, 27920463 - 27920738
Alignment:
Q  92 caaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcannnnnnnna-aattaattttctagtgctcaa 190  Q
    |||||||||| |||||||||||| |||||||| |||||||||| || || ||||||||||||||  |||          ||||| ||||||  |||||||    
T  27920463 caaatcaagaacctcttctattgcatctcagtttccttcaaagccttctgaaggtattttattgtttcattttatttttaattagttttctt-tgctcaa 27920561  T
Q  191 atatgcataaacattatttcatgtactcgcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgaga 290  Q
    ||||||||||  ||| |||| | ||||      |||||||| |||||||||| |||| ||||| ||||||| ||||   |||| |||| |||||||||||    
T  27920562 atatgcataattattctttcctatactt-----tcaggggacccttctcaaatagataaagatctaagttcatctttggttgtgacaaaggagcttgaga 27920656  T
Q  291 atctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatccttcatttcttct 372  Q
    ||||||| |||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  27920657 atctagtctccaagaagcatttggctattgagaacttgtctttgttgactgacttccttgttaagcatccttcagttcttct 27920738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 224 - 372
Target Start/End: Original strand, 30993721 - 30993869
Alignment:
Q  224 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 323  Q
    |||||||| |||||||||| |||||||||||||||||||||||   |||||||| ||||||||||||||||||| ||||||||  ||||||||||||| |    
T  30993721 tcaggggacccttctcaaatagatgaagatttaagttcttctttggttgtcacaggggagcttgagaatctagtctccaagaagtatttagctattgata 30993820  T
Q  324 aattgtctttgttgactgatttccttgttaagcatccttcatttcttct 372  Q
    | ||||  |||||||| |||||||||||||| ||||||||| |||||||    
T  30993821 acttgtacttgttgacggatttccttgttaatcatccttcaattcttct 30993869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 224 - 370
Target Start/End: Original strand, 27954559 - 27954705
Alignment:
Q  224 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 323  Q
    |||||||| |||||||||| ||||| |||||||||||||| ||   ||||||||||||||||||| ||| || | ||||| || ||||| ||||||||||    
T  27954559 tcaggggacccttctcaaatagatggagatttaagttcttatttggttgtcacaagggagcttgaaaatataatctccaataagcatttggctattgaga 27954658  T
Q  324 aattgtctttgttgactgatttccttgttaagcatccttcatttctt 370  Q
    | ||||||||||||||||||||||| |||||||||||||||||||||    
T  27954659 acttgtctttgttgactgatttcctagttaagcatccttcatttctt 27954705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 224 - 370
Target Start/End: Complemental strand, 8538860 - 8538714
Alignment:
Q  224 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 323  Q
    |||||||| |||||||||  |||||||||||||| ||||||||   ||||||||||||||||||| |||||||| |||||||||||||| |||||||| |    
T  8538860 tcaggggacccttctcaattagatgaagatttaatttcttctttggttgtcacaagggagcttgaaaatctagtctccaagaatcatttggctattgata 8538761  T
Q  324 aattgtctttgttgactgatttccttgttaagcatccttcatttctt 370  Q
    |  |||| ||||||||  ||||||||||||| ||||||||| |||||    
T  8538760 acatgtccttgttgaccaatttccttgttaaccatccttcaattctt 8538714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 236 - 363
Target Start/End: Complemental strand, 27430715 - 27430588
Alignment:
Q  236 tctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgt 335  Q
    ||||||| ||||||| |||| ||||| ||||    |||||||| ||| || ||||||||||| |||||||||||||| ||||| ||||| ||||||||||    
T  27430715 tctcaaatagatgaatattttagttcgtctttggctgtcacaaaggaactcgagaatctagtctccaagaatcatttggctatcgagaacttgtctttgt 27430616  T
Q  336 tgactgatttccttgttaagcatccttc 363  Q
    ||||||||||||||||||||||||||||    
T  27430615 tgactgatttccttgttaagcatccttc 27430588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 28037611 - 28037737
Alignment:
Q  6 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 105  Q
    ||||||| || |||||||||  |||||||||||||||| |||||||||||| | |||||| | ||||| ||||| || ||||||||||||||||||||||    
T  28037611 tcagtttatccaaatgatgataatgtcatgaaagtaagttcaaatattgaggatcagttttctaaggatgatgacatgttagtttccaaatcaagaccct 28037710  T
Q  106 cttctattgaatctcagtgtccttcaa 132  Q
    ||||||||| |||||| | ||||||||    
T  28037711 cttctattgcatctcattttccttcaa 28037737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 8539218 - 8539081
Alignment:
Q  14 tctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctcttctatt 113  Q
    |||||||||||| | || |||||||||||| ||||||||| || |  ||||||| ||||| || ||||||||||||||||||||||||| ||||| ||||    
T  8539218 tctaaatgatgatgttgccatgaaagtaagctcaaatattcagaatgagtttcctaaggatgaagaaatattagtttccaaatcaagactctcttgtatt 8539119  T
Q  114 gaatctcagtgtccttcaaagtctactcaaggtatttt 151  Q
      |||||||| |||||||||| || || ||||||||||    
T  8539118 ccatctcagtctccttcaaagccttctgaaggtatttt 8539081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 224 - 363
Target Start/End: Original strand, 28037895 - 28038034
Alignment:
Q  224 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 323  Q
    |||||||| |||||||||| |||  ||| |||||||| |||||   |||||| |  ||| |||||||||||||| || ||||| ||||| |||||||| |    
T  28037895 tcaggggacccttctcaaatagaaaaagctttaagttattctttggttgtcaaagcggaacttgagaatctagtctctaagaagcatttggctattgata 28037994  T
Q  324 aattgtctttgttgactgatttccttgttaagcatccttc 363  Q
    | ||||||||||||||||||||| ||||||||||||||||    
T  28037995 atttgtctttgttgactgatttctttgttaagcatccttc 28038034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 224 - 362
Target Start/End: Original strand, 28163032 - 28163170
Alignment:
Q  224 tcaggggaaccttctcaaagagatgaagatttaagttcttctt-gcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgag 322  Q
    |||||||| |||||||||| ||  |||||||| |||||||||| |||| ||||  |||||||||||| | ||||| |||||||| ||||| | |  |||     
T  28163032 tcaggggacccttctcaaaaagtagaagatttcagttcttctttgcat-gtcaagagggagcttgagcaactagtctccaagaagcatttcgattatgat 28163130  T
Q  323 aaattgtctttgttgactgatttccttgttaagcatcctt 362  Q
    || ||||||||||||||||||||| |||||||||||||||    
T  28163131 aacttgtctttgttgactgatttctttgttaagcatcctt 28163170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 363
Target Start/End: Complemental strand, 28479602 - 28479461
Alignment:
Q  222 tctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattga 321  Q
    ||||||| || ||||||||||  |  |||||||||||||||||||   ||||||  || ||||||||| | ||||| |||||||||||||| | |  |||    
T  28479602 tctcaggagacccttctcaaaatgtagaagatttaagttcttctttgcttgtcaagagtgagcttgaggaactagtctccaagaatcatttggattgtga 28479503  T
Q  322 gaaattgtctttgttgactgatttccttgttaagcatccttc 363  Q
    ||| |||||||||||||||| ||||||||||| | |||||||    
T  28479502 gaacttgtctttgttgactgctttccttgttaggaatccttc 28479461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 363
Target Start/End: Complemental strand, 28508785 - 28508644
Alignment:
Q  222 tctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattga 321  Q
    ||||||| || ||||||||||  |  |||||||||||||||||||   ||||||  || ||||||||| | ||||| ||||||||| |||| | |  |||    
T  28508785 tctcaggagacccttctcaaaatgtagaagatttaagttcttctttgcttgtcaagagtgagcttgagcaactagtctccaagaattatttggattgtga 28508686  T
Q  322 gaaattgtctttgttgactgatttccttgttaagcatccttc 363  Q
    ||| |||||||||||||||| ||||||||||||| |||||||    
T  28508685 gaacttgtctttgttgactgttttccttgttaagaatccttc 28508644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 27430870 - 27430798
Alignment:
Q  88 tttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatca 160  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||| || || ||| ||||||||||| |||    
T  27430870 tttccaaatcaagaccctcttatattgcatctcagtgtccttcaaagcctgctgaagttattttattgcttca 27430798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 224 - 363
Target Start/End: Original strand, 28057568 - 28057707
Alignment:
Q  224 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 323  Q
    |||||||  |||||||||| ||  |||||||| ||||||||||   ||||||  |||||||||||| | ||| | |||||||| ||||| | |  |||||    
T  28057568 tcaggggttccttctcaaaaagtagaagatttcagttcttctttgcttgtcaagagggagcttgagcaactactctccaagaagcatttggattatgaga 28057667  T
Q  324 aattgtctttgttgactgatttccttgttaagcatccttc 363  Q
    |  |||||||||||||||||||| ||||||| ||||||||    
T  28057668 acgtgtctttgttgactgatttctttgttaaacatccttc 28057707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 224 - 363
Target Start/End: Original strand, 28067993 - 28068132
Alignment:
Q  224 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 323  Q
    |||||||  |||||||||| ||  |||||||| ||||||||||   ||||||  |||||||||||| | ||| | |||||||| ||||| | |  |||||    
T  28067993 tcaggggttccttctcaaaaagtagaagatttcagttcttctttgcttgtcaagagggagcttgagcaactactctccaagaagcatttggattatgaga 28068092  T
Q  324 aattgtctttgttgactgatttccttgttaagcatccttc 363  Q
    |  |||||||||||||||||||| ||||||| ||||||||    
T  28068093 acgtgtctttgttgactgatttctttgttaaacatccttc 28068132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 224 - 369
Target Start/End: Complemental strand, 18078976 - 18078831
Alignment:
Q  224 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 323  Q
    ||||||||  ||||||| | ||| |||||||||||||||||||   ||||| | |||||||||||||| ||||| ||  ||||  ||||   |  |||||    
T  18078976 tcaggggactcttctcatatagaagaagatttaagttcttctttgcttgtcgcgagggagcttgagaaactagtctctgagaagtatttgaattatgaga 18078877  T
Q  324 aattgtctttgttgactgatttccttgttaagcatccttcatttct 369  Q
    | || |||||||||||||||||| |||||||| |||||||| ||||    
T  18078876 acttttctttgttgactgatttctttgttaagaatccttcagttct 18078831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 370
Target Start/End: Complemental strand, 27458477 - 27458426
Alignment:
Q  319 tgagaaattgtctttgttgactgatttccttgttaagcatccttcatttctt 370  Q
    |||||| |||||||||||||||||||||||||||||||| |||||| |||||    
T  27458477 tgagaacttgtctttgttgactgatttccttgttaagcacccttcacttctt 27458426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 27458815 - 27458741
Alignment:
Q  6 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaa 80  Q
    |||||||||||||||||||| | |||||| |||||||| |||||||||||| | |||||||| || || ||||||    
T  27458815 tcagtttctctaaatgatgatgctgtcataaaagtaagctcaaatattgagaatcagtttcctaacgatgatgaa 27458741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 26138885 - 26138821
Alignment:
Q  299 tccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatccttc 363  Q
    |||||||||||||| | |  || ||| ||||||||||||||||||||| ||||||||||||||||    
T  26138885 tccaagaatcatttggattgtgggaatttgtctttgttgactgatttctttgttaagcatccttc 26138821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 26139185 - 26139089
Alignment:
Q  11 ttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctct 107  Q
    |||||||||||||||   | ||| ||||||||| |||||||||||| |||||||||| | ||| ||||| ||| ||||||| ||||| | |||||||    
T  26139185 ttctctaaatgatgattctttcaagaaagtaagctcaaatattgaggaacagtttcctatggatgatgatataatagtttctaaatctaaaccctct 26139089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 363
Target Start/End: Complemental strand, 26204365 - 26204229
Alignment:
Q  224 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 323  Q
    |||| ||| |||||||||| ||   |||||||||||||||  ||| |||||| ||| ||||||||| | ||| | |||||||||||||| | |  ||  |    
T  26204365 tcagaggacccttctcaaaaagtacaagatttaagttctt--tgc-ttgtcaaaagtgagcttgagcaactaatctccaagaatcatttggattgtggaa 26204269  T
Q  324 aattgtctttgttgactgatttccttgttaagcatccttc 363  Q
    | || |||||||||||||||||| ||||||||||||||||    
T  26204268 atttttctttgttgactgatttctttgttaagcatccttc 26204229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 28162792 - 28162891
Alignment:
Q  8 agtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctct 107  Q
    |||||||| ||||||||| | | ||| ||||||||| |||||||||||| |||| ||||| |||   ||||| ||| ||||||||||||| | |||||||    
T  28162792 agtttctcgaaatgatgatgctttcaagaaagtaagctcaaatattgaggaacaatttcctaagattgatgatataatagtttccaaatctaaaccctct 28162891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 11421159 - 11421232
Alignment:
Q  6 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatga 79  Q
    |||||| ||||||||||||| | ||||||||||| |||  |||||||||||||||| || || ||||| |||||    
T  11421159 tcagttgctctaaatgatgatgctgtcatgaaagcaagcacaaatattgagcaacatttacctaaggatgatga 11421232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 26109974 - 26109937
Alignment:
Q  326 ttgtctttgttgactgatttccttgttaagcatccttc 363  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  26109974 ttgtctttgttgactgatttctttgttaagcatccttc 26109937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 26110303 - 26110202
Alignment:
Q  6 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 105  Q
    |||| |||||||||| ||||   | ||| ||||||||| |||||||||||| |||| ||| | ||||| ||||| ||| ||||||||||||| | |||||    
T  26110303 tcaggttctctaaatcatgattctttcaagaaagtaagctcaaatattgaggaacaattttctaaggatgatgatataatagtttccaaatctaaaccct 26110204  T
Q  106 ct 107  Q
    ||    
T  26110203 ct 26110202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 26127383 - 26127278
Alignment:
Q  6 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 105  Q
    |||| |||||||||| ||||   | ||| ||||||||| |||||||||||| |||| ||||  ||||| ||| | ||| ||||||||||||| | |||||    
T  26127383 tcaggttctctaaatcatgattctttcaagaaagtaagctcaaatattgaggaacaatttcataaggatgataatataatagtttccaaatctaaaccct 26127284  T
Q  106 cttcta 111  Q
    ||||||    
T  26127283 cttcta 26127278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 28187144 - 28187181
Alignment:
Q  326 ttgtctttgttgactgatttccttgttaagcatccttc 363  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  28187144 ttgtctttgttgactgatttctttgttaagcatccttc 28187181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 18077027 - 18076983
Alignment:
Q  89 ttccaaatcaagaccctcttctattgaatctcagtgtccttcaaa 133  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||    
T  18077027 ttccaaatcacgaccctcttctattgcatctcagtttccttcaaa 18076983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 363
Target Start/End: Original strand, 28136724 - 28136839
Alignment:
Q  248 gaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttcc 347  Q
    |||||||||||||||||||   ||||||  || ||||||||| | ||||| |||||||||||||| | |  |||||| || ||| | ||||| | |||||    
T  28136724 gaagatttaagttcttctttgtttgtcaagagtgagcttgagcaactagtctccaagaatcatttggattatgagaacttatctctattgacaggtttcc 28136823  T
Q  348 ttgttaagcatccttc 363  Q
    |||||||  |||||||    
T  28136824 ttgttaaaaatccttc 28136839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 26177433 - 26177328
Alignment:
Q  6 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 105  Q
    |||| |||||||||| ||||   | ||| ||||||||| |||| ||||||| |||| ||||  ||||| ||| | ||| ||||||||||||| | |||||    
T  26177433 tcaggttctctaaatcatgattctttcaagaaagtaagctcaattattgaggaacaatttcataaggatgataatataatagtttccaaatctaaaccct 26177334  T
Q  106 cttcta 111  Q
    ||||||    
T  26177333 cttcta 26177328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 26204566 - 26204494
Alignment:
Q  35 gaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctct 107  Q
    |||||||||||||||||||||| || | ||| |||| || | ||| ||| ||||||||||||| | |||||||    
T  26204566 gaaagtaagatcaaatattgaggaaaattttaccaatgatggtgatataatagtttccaaatctaaaccctct 26204494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 6 - 369
Target Start/End: Original strand, 1910 - 2269
Alignment:
Q  6 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 105  Q
    ||||||| | |||||||||| | | ||||||||||||| ||| |||||||| | || ||||  ||||| |||||||||||||||||||||||||  | ||    
T  1910 tcagtttttttaaatgatgatgctatcatgaaagtaagctcagatattgaggatcaatttcttaaggatgatgaaatattagtttccaaatcaaagctct 2009  T
Q  106 cttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcannnnnnnna-aattaattttctagtgctcaaatatgcataaacat 204  Q
     | |||||| ||||||||||||||||||| || |||||||||||||||||| |||          |||||||||||| ||||| ||||||||||||  ||    
T  2010 gtactattgtatctcagtgtccttcaaagcctgctcaaggtattttattgcttcattttagttttaattaattttcttgtgctaaaatatgcataattat 2109  T
Q  205 tatttcatgtactcgcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaag 304  Q
    |||| | | ||||      ||||| || |||||||||||||||||||||||||||| ||||||  ||||||||| ||||||   ||||||||||||| ||    
T  2110 tattacctatactt-----tcaggtgacccttctcaaagagatgaagatttaagttattcttgggttgtcacaaaggagctacggaatctagtttccgag 2204  T
Q  305 aatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatccttcatttct 369  Q
    ||| |||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||| ||||    
T  2205 aattatttggctattgagaacttgtctttgttgactgatttcctagttaagaatccttcagttct 2269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 530 - 621
Alignment:
Q  6 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatc 97  Q
    |||||| |||||||||| || | ||||||||||||||| | |||||||||| |||||||||| ||||| ||||||||| || ||||| ||||    
T  530 tcagttcctctaaatgacgatgttgtcatgaaagtaagcttaaatattgaggaacagtttcctaaggatgatgaaataataatttcccaatc 621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 248 - 363
Target Start/End: Original strand, 19507 - 19622
Alignment:
Q  248 gaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttcc 347  Q
    |||||||||||||||||||   ||||||  |||||||||||| | ||| | |||||||| ||||| | |  ||||||  ||||||||||||||||||||     
T  19507 gaagatttaagttcttcttcgcttgtcaagagggagcttgagcaactactctccaagaagcatttggattatgagaacatgtctttgttgactgatttct 19606  T
Q  348 ttgttaagcatccttc 363  Q
    ||||||| ||||||||    
T  19607 ttgttaaacatccttc 19622  T

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