View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8047_low_1 (Length: 746)

Name: NF8047_low_1
Description: NF8047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8047_low_1
NF8047_low_1
[»] chr8 (10 HSPs)
chr8 (18-700)||(23496522-23497197)
chr8 (637-697)||(30477701-30477761)
chr8 (580-697)||(13754818-13754936)
chr8 (582-685)||(23269306-23269411)
chr8 (638-693)||(18323007-18323062)
chr8 (592-697)||(26916822-26916929)
chr8 (663-697)||(6928087-6928121)
chr8 (663-697)||(24507517-24507551)
chr8 (636-697)||(17698255-17698316)
chr8 (636-697)||(17319602-17319663)
[»] chr2 (12 HSPs)
chr2 (496-697)||(45257985-45258183)
chr2 (636-697)||(3586423-3586484)
chr2 (577-697)||(27846429-27846550)
chr2 (636-697)||(12169033-12169094)
chr2 (636-697)||(19919036-19919097)
chr2 (640-697)||(36267558-36267615)
chr2 (574-697)||(45715055-45715179)
chr2 (496-568)||(18134487-18134559)
chr2 (645-693)||(24499853-24499901)
chr2 (637-687)||(17658030-17658079)
chr2 (637-687)||(17672042-17672091)
chr2 (637-686)||(17626971-17627019)
[»] chr5 (7 HSPs)
chr5 (577-697)||(27083148-27083269)
chr5 (574-694)||(26994513-26994634)
chr5 (585-697)||(20025343-20025456)
chr5 (645-697)||(34493573-34493625)
chr5 (574-687)||(8938981-8939095)
chr5 (645-697)||(22903153-22903205)
chr5 (592-695)||(32418410-32418515)
[»] chr4 (11 HSPs)
chr4 (574-697)||(47253337-47253461)
chr4 (614-697)||(19809761-19809844)
chr4 (577-697)||(2674484-2674605)
chr4 (636-697)||(12683845-12683906)
chr4 (637-697)||(19643762-19643822)
chr4 (637-685)||(50151775-50151823)
chr4 (630-697)||(19818753-19818822)
chr4 (637-687)||(26894693-26894743)
chr4 (574-603)||(10982019-10982048)
chr4 (577-606)||(39194222-39194251)
chr4 (645-698)||(40979050-40979103)
[»] chr3 (9 HSPs)
chr3 (575-697)||(30606988-30607111)
chr3 (638-697)||(9801056-9801115)
chr3 (636-697)||(16704462-16704523)
chr3 (645-697)||(2311813-2311865)
chr3 (645-697)||(8122894-8122946)
chr3 (645-698)||(20622467-20622520)
chr3 (645-698)||(28715467-28715520)
chr3 (639-697)||(21342260-21342318)
chr3 (574-697)||(17143656-17143780)
[»] chr1 (11 HSPs)
chr1 (577-697)||(16030455-16030575)
chr1 (577-697)||(5459619-5459740)
chr1 (497-550)||(16522842-16522895)
chr1 (645-697)||(2140927-2140979)
chr1 (639-697)||(34273147-34273205)
chr1 (656-697)||(22414835-22414876)
chr1 (636-697)||(26977800-26977861)
chr1 (656-697)||(52565640-52565681)
chr1 (501-697)||(5671830-5672023)
chr1 (637-687)||(8019018-8019068)
chr1 (639-697)||(16050454-16050512)
[»] chr7 (10 HSPs)
chr7 (577-698)||(16203781-16203903)
chr7 (530-670)||(21161342-21161484)
chr7 (577-698)||(16204350-16204472)
chr7 (577-697)||(26762821-26762942)
chr7 (640-693)||(9135335-9135388)
chr7 (636-695)||(43172006-43172065)
chr7 (636-693)||(29373510-29373567)
chr7 (585-686)||(13159433-13159532)
chr7 (577-693)||(5863251-5863368)
chr7 (638-697)||(12265097-12265156)
[»] chr6 (20 HSPs)
chr6 (577-697)||(3404772-3404893)
chr6 (636-697)||(19305524-19305585)
chr6 (577-697)||(14268491-14268612)
chr6 (638-697)||(20148375-20148434)
chr6 (638-697)||(22184394-22184453)
chr6 (639-697)||(15480314-15480372)
chr6 (577-697)||(34572904-34573025)
chr6 (639-697)||(18147366-18147424)
chr6 (574-697)||(33596921-33597045)
chr6 (596-698)||(689786-689889)
chr6 (645-697)||(12203617-12203669)
chr6 (577-694)||(11087565-11087683)
chr6 (636-691)||(30681058-30681113)
chr6 (630-687)||(9291984-9292041)
chr6 (640-697)||(10115659-10115716)
chr6 (636-697)||(16131028-16131089)
chr6 (637-698)||(17380156-17380217)
chr6 (651-695)||(4251029-4251073)
chr6 (638-685)||(27772537-27772584)
chr6 (636-697)||(31423807-31423868)
[»] scaffold0023 (1 HSPs)
scaffold0023 (574-697)||(95717-95841)
[»] scaffold0054 (1 HSPs)
scaffold0054 (638-697)||(68774-68833)
[»] scaffold0291 (2 HSPs)
scaffold0291 (639-697)||(15403-15461)
scaffold0291 (663-697)||(8574-8608)
[»] scaffold0360 (1 HSPs)
scaffold0360 (639-697)||(13982-14040)
[»] scaffold0002 (1 HSPs)
scaffold0002 (636-698)||(120981-121043)
[»] scaffold0140 (1 HSPs)
scaffold0140 (611-697)||(6358-6445)
[»] scaffold0057 (1 HSPs)
scaffold0057 (656-697)||(73792-73833)


Alignment Details
Target: chr8 (Bit Score: 620; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 18 - 700
Target Start/End: Original strand, 23496522 - 23497197
Alignment:
Q  18 acatcaaaataagcaatgaacaagcatcgctactactcaccaaaaatcctcctttgatgggcggcatccttccctctaatcaccatcctagtctccacaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23496522 acatcaaaataagcaatgaacaagcatcgctactactcaccaaaaatcctcctttgatgggcggcatccttccctctaatcaccatcctagtctccacaa 23496621  T
Q  118 attggactttcttaattagcttggatggatcatccagatccttgtcctgctgcagctcaaacgaacgcacaaattgctctaagtcatacttcaactgtag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||||    
T  23496622 attggactttcttaattagcttggatggatcatccagatccttgtcctgc---agctcaaacgaacgcacaaattgctctaagtcatacctcaactgtag 23496718  T
Q  218 ctcaaaaggggtaaggtcggcgtccaagctataagtagattcagtgggaggggagtcttgatgctcctgactccaagaatgggaaaaaggggaacatgcg 317  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23496719 ctcagaaggggtaaggtcggcgtccaagctataagtagattcagtgggaggggagtcttgatgctcctgactccaagaatgggaaaaaggggaacatgcg 23496818  T
Q  318 caacttcgccaggagaagatgacgcgcctgaggagccggcgccacaagcaaggccatgattttgcgctcgccaatccacaaaaaattcagattcctgagt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23496819 caacttcgccaggagaagatgacgcgcctgaggagccggcgccacaagcaaggccatgattttgcgctcgccaatccacaaaaaattcagattcctgagt 23496918  T
Q  418 agcatccgaatcaggactttctgaatccaaacgatctatctgattaatcatgggggacctggcaaatacaggtgtgggcgcgcctgaaggaacatgccaa 517  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23496919 agcatccgaatcagaactttctgaatccaaacgatctatctgattaatcatgggggaccaggcaaatacaggtgtgggcgcgcctgaaggaacatgccaa 23497018  T
Q  518 ctttaatgcaccgcaccgcatcaaagcacgccttcacgtgaggatcaccctgcatgcatgtgtcctctaaccgctccctaatcacacgcgcaaaacccgg 617  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| |||||||||||    
T  23497019 ctttagtgcaccgcaccgcatcaaagcacgccttcacgtgaggatcaccc----tgcatgtgtcctctaaccgctccctaatcacacgtgcaaaacccgg 23497114  T
Q  618 agacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacactttaca 700  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23497115 agacaattatcttcacgagcgcctatataagggtgactttgcttaaccctcaaggtatgattcactattcacaacactttaca 23497197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 637 - 697
Target Start/End: Complemental strand, 30477761 - 30477701
Alignment:
Q  637 cgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    ||||||| |||||||||| || ||| |||||||||||||||||||||||||||||||||||    
T  30477761 cgcctatataagggtgacattacttcaccctcaaggtatgattcacttttcacaacacttt 30477701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 580 - 697
Target Start/End: Complemental strand, 13754936 - 13754818
Alignment:
Q  580 tcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgat 678  Q
    ||||||||||| || |||||||||||| |||||| ||| ||||  ||||  ||| | | |||||| |||| ||||||| |||| |||||||||||| |||    
T  13754936 tcctctaaccgttcactaatcacacgccgcaaaatccgaagacggttattctcatgcgtgcctatataagagtgacttagcttcaccctcaaggtaggat 13754837  T
Q  679 tcacttttcacaacacttt 697  Q
    ||||||| |||||||||||    
T  13754836 tcactttacacaacacttt 13754818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 582 - 685
Target Start/End: Complemental strand, 23269411 - 23269306
Alignment:
Q  582 ctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttcacga-gcgcctatgtaagggtgactttgcttaaccctcaaggtatgatt 679  Q
    |||| ||||||||||| |||||||| ||||||| |||||||  ||||| |||  | |||||||| || ||||||| |||||| |||||||||||| ||||    
T  23269411 ctctgaccgctccctattcacacgctgcaaaactcggagacggttatcctcaacacgcgcctatatatgggtgacattgcttcaccctcaaggtacgatt 23269312  T
Q  680 cacttt 685  Q
    ||||||    
T  23269311 cacttt 23269306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 638 - 693
Target Start/End: Complemental strand, 18323062 - 18323007
Alignment:
Q  638 gcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaaca 693  Q
    |||||| |||||||||| |||||| | |||||| ||||||||||||||||||||||    
T  18323062 gcctatataagggtgaccttgcttcatcctcaatgtatgattcacttttcacaaca 18323007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 592 - 697
Target Start/End: Original strand, 26916822 - 26916929
Alignment:
Q  592 tccctaatcacacgc-gcaaaacccggagacaattatcttca-cgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcac 689  Q
    ||||||||||||||| |||||||| |||| |  ||||  ||| || |||||||| |||||| ||| |||||| |  |||||||||||| |||||||||||    
T  26916822 tccctaatcacacgccgcaaaacctggaggcggttattctcaacgcgcgcctatataagggcgacattgcttcatgctcaaggtatgactcacttttcac 26916921  T
Q  690 aacacttt 697  Q
    ||||||||    
T  26916922 aacacttt 26916929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 6928087 - 6928121
Alignment:
Q  663 accctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||||||||||||||||||||||||||||||||    
T  6928087 accctcaaggtatgattcacttttcacaacacttt 6928121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 24507551 - 24507517
Alignment:
Q  663 accctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||||||||||||||||||||||||||||||||    
T  24507551 accctcaaggtatgattcacttttcacaacacttt 24507517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 636 - 697
Target Start/End: Original strand, 17698255 - 17698316
Alignment:
Q  636 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||||| || ||||| | |||||| |||||||| |||| |||||||||||||||||||||    
T  17698255 gcgcctatatatgggtggccttgcttcaccctcaaagtataattcacttttcacaacacttt 17698316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 697
Target Start/End: Original strand, 17319602 - 17319663
Alignment:
Q  636 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||||| ||| |||||  |||||| |||||| ||| ||||||||||||||||||| ||||    
T  17319602 gcgcctatataaaggtgaacttgcttcaccctcgaggcatgattcacttttcacaactcttt 17319663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 1e-52; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 496 - 697
Target Start/End: Original strand, 45257985 - 45258183
Alignment:
Q  496 cgcgcctgaaggaacatgccaactttaatgcaccgcaccgcatcaaagcacgccttcacgtgaggatcaccctgcatgcatgtgtcctctaaccgctccc 595  Q
    ||||| ||||||||||||| ||||||| ||||||||| | |||| |||||||||| |  | |||||||||||||||||    ||||||||||||||||||    
T  45257985 cgcgcttgaaggaacatgcaaactttagtgcaccgcatcacatccaagcacgcctccgtgcgaggatcaccctgcatg----tgtcctctaaccgctccc 45258080  T
Q  596 taatcacacgc-gcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacac 694  Q
    ||||||||||| ||||||| |||||||  ||||| |||||||  ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45258081 taatcacacgccgcaaaactcggagacggttatcgtcacgaggacctatataagggtgactttgcttcaccctcaaggtatgattcacttttcacaacac 45258180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 636 - 697
Target Start/End: Complemental strand, 3586484 - 3586423
Alignment:
Q  636 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||||| |||||||||  |||||| |||||||||||||||||||||||||||||||||||    
T  3586484 gcgcctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacacttt 3586423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 577 - 697
Target Start/End: Original strand, 27846429 - 27846550
Alignment:
Q  577 gtgtcctctaaccgctccctaatcacacgcgcaaaacccggagacaattatct-tcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtat 675  Q
    ||||||||||| || ||||||||||||| |||||||||| |||||| |||| | ||| | | | ||||||| |||||||||  ||| ||||||||||||     
T  27846429 gtgtcctctaatcgttccctaatcacacacgcaaaacccagagacagttatttctcaggcgtgtctatgtatgggtgacttaacttcaccctcaaggtac 27846528  T
Q  676 gattcacttttcacaacacttt 697  Q
     ||||||||| |||||||||||    
T  27846529 aattcactttacacaacacttt 27846550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 636 - 697
Target Start/End: Complemental strand, 12169094 - 12169033
Alignment:
Q  636 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||||| |||||||| | |||||| ||||||||||||| |||||||||||||||||||||    
T  12169094 gcgcctatttaagggtggcattgcttcaccctcaaggtataattcacttttcacaacacttt 12169033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 636 - 697
Target Start/End: Original strand, 19919036 - 19919097
Alignment:
Q  636 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||||| |||| ||||  |||||| | |||||||||||||||||||||||||||||||||    
T  19919036 gcgcctatataagagtgatattgcttcatcctcaaggtatgattcacttttcacaacacttt 19919097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 640 - 697
Target Start/End: Complemental strand, 36267615 - 36267558
Alignment:
Q  640 ctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||| |||||||||  |||||| |||||||||||||||||||||||||||||| ||||    
T  36267615 ctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacccttt 36267558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 697
Target Start/End: Complemental strand, 45715179 - 45715055
Alignment:
Q  574 catgtgtcctctaaccgctccctaatcacacgcg-caaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaagg 672  Q
    ||||||||||||||| |||| ||||||||||||  || | | | |||||| ||||  ||||| | || |||  ||||||||||| |||| ||| ||||||    
T  45715179 catgtgtcctctaactgctctctaatcacacgccacatatctcagagacagttattctcacgcgtgcttatacaagggtgacttagcttcaccttcaagg 45715080  T
Q  673 tatgattcacttttcacaacacttt 697  Q
    ||||||||| ||||||| |||||||    
T  45715079 tatgattcaattttcaccacacttt 45715055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 568
Target Start/End: Complemental strand, 18134559 - 18134487
Alignment:
Q  496 cgcgcctgaaggaacatgccaactttaatgcaccgcaccgcatcaaagcacgccttcacgtgaggatcaccct 568  Q
    |||||||||||||| |||||||||||| |||||| |||| |||| || ||||||  |||| ||||| ||||||    
T  18134559 cgcgcctgaaggaatatgccaactttagtgcaccacaccacatctaaacacgcccccacgcgaggaccaccct 18134487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 645 - 693
Target Start/End: Complemental strand, 24499901 - 24499853
Alignment:
Q  645 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaaca 693  Q
    |||||||||  |||||| ||||| |||||||||||||||||||||||||    
T  24499901 taagggtgaacttgcttcacccttaaggtatgattcacttttcacaaca 24499853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 637 - 687
Target Start/End: Complemental strand, 17658079 - 17658030
Alignment:
Q  637 cgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttc 687  Q
    ||||||| |||||||||||| |||| |||| ||||||||||||||||||||    
T  17658079 cgcctatttaagggtgacttagcttcaccc-caaggtatgattcacttttc 17658030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 637 - 687
Target Start/End: Complemental strand, 17672091 - 17672042
Alignment:
Q  637 cgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttc 687  Q
    ||||||| |||||||||||| |||| |||| ||||||||||||||||||||    
T  17672091 cgcctatttaagggtgacttagcttcaccc-caaggtatgattcacttttc 17672042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 686
Target Start/End: Complemental strand, 17627019 - 17626971
Alignment:
Q  637 cgcctatgtaagggtgactttgcttaaccctcaaggtatgattcactttt 686  Q
    ||||||| |||||||||||| |||| |||| |||||||||||||||||||    
T  17627019 cgcctatttaagggtgacttagcttcaccc-caaggtatgattcactttt 17626971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 4e-31; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 577 - 697
Target Start/End: Original strand, 27083148 - 27083269
Alignment:
Q  577 gtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtat 675  Q
    |||||||||||| |||| |||||||||||| |||||||| ||||||| ||||  ||||| ||||||||| |||||||||||  ||| |||||||||||||    
T  27083148 gtgtcctctaactgctctctaatcacacgccgcaaaacctggagacagttattctcacgcgcgcctatgcaagggtgacttaacttcaccctcaaggtat 27083247  T
Q  676 gattcacttttcacaacacttt 697  Q
    ||||||||||||||||||||||    
T  27083248 gattcacttttcacaacacttt 27083269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 574 - 694
Target Start/End: Original strand, 26994513 - 26994634
Alignment:
Q  574 catgtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaatta-tcttcacgagcgcctatgtaagggtgactttgcttaaccctcaag 671  Q
    |||||||||||||| || ||||||||||||||| ||||||| || ||||  ||| |||  ||| |||||||| |||||||||| |||||| |||| ||||    
T  26994513 catgtgtcctctaatcg-tccctaatcacacgccgcaaaactcgaagacggttactctcaacgcgcgcctatataagggtgaccttgcttcacccccaag 26994611  T
Q  672 gtatgattcacttttcacaacac 694  Q
    |||||||||||||||||||||||    
T  26994612 gtatgattcacttttcacaacac 26994634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 585 - 697
Target Start/End: Complemental strand, 20025456 - 20025343
Alignment:
Q  585 taaccgctccctaatcacacgcg-caaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcact 683  Q
    ||||| |||||||||||||| |  ||||||||||||||  ||||  ||||| |||||| | |||||||||| | |||| |||||||||| ||||||||||    
T  20025456 taaccactccctaatcacacaccacaaaacccggagacggttattctcacgcgcgcctgtataagggtgacctagcttcaccctcaaggaatgattcact 20025357  T
Q  684 tttcacaacacttt 697  Q
    || |||||||||||    
T  20025356 ttacacaacacttt 20025343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 645 - 697
Target Start/End: Complemental strand, 34493625 - 34493573
Alignment:
Q  645 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||||||||| | || |||||||||||||||||||||||||||||||||||    
T  34493625 taagggtgacttagtttcaccctcaaggtatgattcacttttcacaacacttt 34493573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 574 - 687
Target Start/End: Complemental strand, 8939095 - 8938981
Alignment:
Q  574 catgtgtcctctaaccgctccctaatcacacg-cgcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaagg 672  Q
    |||||||||||||||||||||||||||||||| |||| | ||||||| || ||||  ||||      |||| ||| |||||||| |||| |||||||| |    
T  8939095 catgtgtcctctaaccgctccctaatcacacgccgcatatcccggaggcagttattctcacacaaatctatataacggtgacttagcttcaccctcaatg 8938996  T
Q  673 tatgattcacttttc 687  Q
    |||||||||||||||    
T  8938995 tatgattcacttttc 8938981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 645 - 697
Target Start/End: Complemental strand, 22903205 - 22903153
Alignment:
Q  645 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||||||  ||| || |||||||||||||||||||||||||||||||||||    
T  22903205 taagggtgatattgtttcaccctcaaggtatgattcacttttcacaacacttt 22903153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 695
Target Start/End: Original strand, 32418410 - 32418515
Alignment:
Q  592 tccctaatcacacgc-gcaaaacccggagacaattat-cttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcac 689  Q
    ||||||||||||||| ||| |||||||||||| |||  ||| |||  || ||||  ||||||||  |||||| | ||||||||||||||||||| |||||    
T  32418410 tccctaatcacacgccgcataacccggagacagttaagcttaacgcacgtctatacaagggtgaacttgcttcatcctcaaggtatgattcactcttcac 32418509  T
Q  690 aacact 695  Q
    ||||||    
T  32418510 aacact 32418515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 574 - 697
Target Start/End: Complemental strand, 47253461 - 47253337
Alignment:
Q  574 catgtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaagg 672  Q
    ||||||||||||||  |||| |||||||||| | |||||||||||||||| ||||  ||| | |||||||| |||||||||||| |||| ||||||||||    
T  47253461 catgtgtcctctaattgctctctaatcacacaccgcaaaacccggagacagttattatcatgcgcgcctatataagggtgacttagcttcaccctcaagg 47253362  T
Q  673 tatgattcacttttcacaacacttt 697  Q
    |||||||||||||||||||||||||    
T  47253361 tatgattcacttttcacaacacttt 47253337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 614 - 697
Target Start/End: Complemental strand, 19809844 - 19809761
Alignment:
Q  614 ccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    ||||||||| ||||  ||||| ||||||||||||||||||||| | || ||||||||||||| |||||||||||||||||||||    
T  19809844 ccggagacagttattctcacgcgcgcctatgtaagggtgacttagtttcaccctcaaggtataattcacttttcacaacacttt 19809761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 577 - 697
Target Start/End: Original strand, 2674484 - 2674605
Alignment:
Q  577 gtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttca-cgagcgcctatgtaagggtgactttgcttaaccctcaaggta 674  Q
    |||||||||||| | ||||||||||||||| |||||| ||||||||  ||||  ||| || |||| ||| |||||||||  || ||| | ||||||||||    
T  2674484 gtgtcctctaactg-tccctaatcacacgccgcaaaatccggagacggttatgctcaacgcgcgcttatataagggtgaacttacttcatcctcaaggta 2674582  T
Q  675 tgattcacttttcacaacacttt 697  Q
    |||||||||||||||||||||||    
T  2674583 tgattcacttttcacaacacttt 2674605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 636 - 697
Target Start/End: Complemental strand, 12683906 - 12683845
Alignment:
Q  636 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||||  |||||||||  |||||| ||||| |||||||||||||||||||||||||||||    
T  12683906 gcgcctagataagggtgaacttgcttcacccttaaggtatgattcacttttcacaacacttt 12683845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 637 - 697
Target Start/End: Complemental strand, 19643822 - 19643762
Alignment:
Q  637 cgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    ||||||| |||||||||  ||| || ||||||||||||||||||||||||||||| |||||    
T  19643822 cgcctatataagggtgaacttgtttcaccctcaaggtatgattcacttttcacaagacttt 19643762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 637 - 685
Target Start/End: Original strand, 50151775 - 50151823
Alignment:
Q  637 cgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttt 685  Q
    ||||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  50151775 cgcctatataagggtgactttgcttcaccctcaaggtatgatttacttt 50151823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 630 - 697
Target Start/End: Complemental strand, 19818822 - 19818753
Alignment:
Q  630 tcacgagcgcctatgtaaggg--tgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    ||||| |||||||||||||||  |||||| | || | | ||||||||| |||||||||||||||||||||    
T  19818822 tcacgtgcgcctatgtaagggcgtgacttagtttcatcatcaaggtataattcacttttcacaacacttt 19818753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 637 - 687
Target Start/End: Original strand, 26894693 - 26894743
Alignment:
Q  637 cgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttc 687  Q
    ||||||| |||| ||||| || |||||||||||||||| ||||||||||||    
T  26894693 cgcctatataagtgtgacatttcttaaccctcaaggtacgattcacttttc 26894743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 603
Target Start/End: Complemental strand, 10982048 - 10982019
Alignment:
Q  574 catgtgtcctctaaccgctccctaatcaca 603  Q
    ||||||||||||||||||||||||||||||    
T  10982048 catgtgtcctctaaccgctccctaatcaca 10982019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 606
Target Start/End: Complemental strand, 39194251 - 39194222
Alignment:
Q  577 gtgtcctctaaccgctccctaatcacacgc 606  Q
    ||||||||||||||||||||||||||||||    
T  39194251 gtgtcctctaaccgctccctaatcacacgc 39194222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 645 - 698
Target Start/End: Original strand, 40979050 - 40979103
Alignment:
Q  645 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttta 698  Q
    ||||||||||||  ||| ||||||||| || |||||||||||||| ||||||||    
T  40979050 taagggtgacttaacttcaccctcaagatacgattcacttttcaccacacttta 40979103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 8e-26; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 575 - 697
Target Start/End: Complemental strand, 30607111 - 30606988
Alignment:
Q  575 atgtgtcctctaaccgctccctaatcacacgcg-caaaacccggagacaattat-cttcacgagcgcctatgtaagggtgactttgcttaaccctcaagg 672  Q
    |||||||||||||||| |||||||||||||||| | ||||||||||||| |||| ||| ||| |||||||| |||||||| | || ||| ||||||||||    
T  30607111 atgtgtcctctaaccg-tccctaatcacacgcggcgaaacccggagacagttattcttaacgcgcgcctatataagggtggccttacttcaccctcaagg 30607013  T
Q  673 tatgattcacttttcacaacacttt 697  Q
    ||| |||||||||||||||||||||    
T  30607012 tataattcacttttcacaacacttt 30606988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 638 - 697
Target Start/End: Original strand, 9801056 - 9801115
Alignment:
Q  638 gcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  9801056 gcctatataagggtgacattgcttcaccctcaaggtatgattcacttttcacaacacttt 9801115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 636 - 697
Target Start/End: Complemental strand, 16704523 - 16704462
Alignment:
Q  636 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||||| |||||||||  |||||| |||||||||||||||||||||||||||||||||||    
T  16704523 gcgcctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacacttt 16704462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 645 - 697
Target Start/End: Original strand, 2311813 - 2311865
Alignment:
Q  645 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||||||| |||||| |||||||||||||||||||| ||||||||||||||    
T  2311813 taagggtgacattgcttcaccctcaaggtatgattcacctttcacaacacttt 2311865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 645 - 697
Target Start/End: Original strand, 8122894 - 8122946
Alignment:
Q  645 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||| ||||    
T  8122894 taagggtgacattgcttcaccctcaaggtatgattcacttttcacaacgcttt 8122946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 645 - 698
Target Start/End: Complemental strand, 20622520 - 20622467
Alignment:
Q  645 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttta 698  Q
    |||||||||  |||||| |||||||||||||||||||||||||||| |||||||    
T  20622520 taagggtgaacttgcttcaccctcaaggtatgattcacttttcacaccacttta 20622467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 645 - 698
Target Start/End: Original strand, 28715467 - 28715520
Alignment:
Q  645 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttta 698  Q
    |||||||||  ||| || ||||||||||||||||||||||||||||||||||||    
T  28715467 taagggtgatattgtttcaccctcaaggtatgattcacttttcacaacacttta 28715520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 639 - 697
Target Start/End: Original strand, 21342260 - 21342318
Alignment:
Q  639 cctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    ||||| ||||||| || || ||| |||||||| ||||||||||||||||||||||||||    
T  21342260 cctatataagggtaaccttacttcaccctcaatgtatgattcacttttcacaacacttt 21342318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 574 - 697
Target Start/End: Original strand, 17143656 - 17143780
Alignment:
Q  574 catgtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttcac-gagcgcctatgtaagggtgactttgcttaaccctcaag 671  Q
    |||||||||||||  || ||||||||||||||| || ||||||| || || |||| ||||  |  ||| ||| |||||||||  ||| || |||| ||||    
T  17143656 catgtgtcctctagtcg-tccctaatcacacgccgcgaaacccgaaggcagttattttcaatgcacgcttatataagggtgatgttgtttcacccccaag 17143754  T
Q  672 gtatgattcacttttcacaacacttt 697  Q
    ||||||||||||||||||||||||||    
T  17143755 gtatgattcacttttcacaacacttt 17143780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 577 - 697
Target Start/End: Complemental strand, 16030575 - 16030455
Alignment:
Q  577 gtgtcctctaaccgctccctaatcacacgcg-caaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtat 675  Q
    |||| |||||||||||||||||||||||||  ||||| ||||||  | ||||||||| | |||||||| |||||||| ||| ||||  ||||||||||||    
T  16030575 gtgttctctaaccgctccctaatcacacgccacaaaatccggagt-agttatcttcatgtgcgcctatataagggtggcttagcttcgccctcaaggtat 16030477  T
Q  676 gattcacttttcacaacacttt 697  Q
    ||||||||||||||||||||||    
T  16030476 gattcacttttcacaacacttt 16030455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 577 - 697
Target Start/End: Original strand, 5459619 - 5459740
Alignment:
Q  577 gtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtat 675  Q
    ||||||| |||| ||||||||||||||||| ||||||| ||| |||  ||||  ||||| ||| |||||| ||| ||||||  ||| | || ||| ||||    
T  5459619 gtgtcctttaactgctccctaatcacacgccgcaaaacacggtgacggttattctcacgcgcgtctatgttaggctgacttaacttcatccccaatgtat 5459718  T
Q  676 gattcacttttcacaacacttt 697  Q
    |||||||||| |||||||||||    
T  5459719 gattcactttacacaacacttt 5459740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 550
Target Start/End: Complemental strand, 16522895 - 16522842
Alignment:
Q  497 gcgcctgaaggaacatgccaactttaatgcaccgcaccgcatcaaagcacgcct 550  Q
    ||||||||||||||||||||||| || ||||||||| |||||| ||||||||||    
T  16522895 gcgcctgaaggaacatgccaactctagtgcaccgcatcgcatccaagcacgcct 16522842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 645 - 697
Target Start/End: Original strand, 2140927 - 2140979
Alignment:
Q  645 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||||||||| |||| |||||||||||||| |||||||| |||||||||||    
T  2140927 taagggtgacttagcttcaccctcaaggtatggttcactttccacaacacttt 2140979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 639 - 697
Target Start/End: Complemental strand, 34273205 - 34273147
Alignment:
Q  639 cctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    ||||| |||||| ||| |||||| ||||||||||||||| ||||||| |||||||||||    
T  34273205 cctatataagggcgacattgcttcaccctcaaggtatgagtcactttacacaacacttt 34273147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 656 - 697
Target Start/End: Complemental strand, 22414876 - 22414835
Alignment:
Q  656 ttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  22414876 ttgcttcaccctcaagatatgattcacttttcacaacacttt 22414835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 636 - 697
Target Start/End: Complemental strand, 26977861 - 26977800
Alignment:
Q  636 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||||| ||||||| |  |||||| ||||||||||||||||||| ||||||||| |||||    
T  26977861 gcgcctatataagggtcaaattgcttcaccctcaaggtatgattcatttttcacaatacttt 26977800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 656 - 697
Target Start/End: Complemental strand, 52565681 - 52565640
Alignment:
Q  656 ttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  52565681 ttgcttcaccctcaagttatgattcacttttcacaacacttt 52565640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 697
Target Start/End: Complemental strand, 5672023 - 5671830
Alignment:
Q  501 ctgaaggaacatgccaactttaatgcaccgcaccgcatcaaagcacgccttcacgtgaggatcaccctgcatgcatgtgtcctctaaccgctccctaatc 600  Q
    ||||||||||| |||||||||| ||||| ||||| |||| || |||| || |||| ||||||||||||  || ||  |||||||| |||||| |||||||    
T  5672023 ctgaaggaacacgccaactttagtgcactgcaccacatccaaacacgtctccacgcgaggatcaccct--ataca--tgtcctcttaccgct-cctaatc 5671929  T
Q  601 acacg-cgcaaaacccggagacaattatcttc-acgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||  |||||||  |||     |||| ||| | | ||| |||| |||| |||||||  ||| ||| |||| ||||||||||||||||||||||||||    
T  5671928 acacgatgcaaaacttggacgtggttattttcaatgcgcgtctatataagagtgacttaacttcaccttcaatgtatgattcacttttcacaacacttt 5671830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 637 - 687
Target Start/End: Complemental strand, 8019068 - 8019018
Alignment:
Q  637 cgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttc 687  Q
    ||||||| |||||||||| | |||| |||| ||||||||||||||||||||    
T  8019068 cgcctatataagggtgacatagcttcacccccaaggtatgattcacttttc 8019018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 639 - 697
Target Start/End: Complemental strand, 16050512 - 16050454
Alignment:
Q  639 cctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    ||||| |||||||| | |||||| | |||||||||||| |||||||||||| |||||||    
T  16050512 cctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacacttt 16050454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 577 - 698
Target Start/End: Complemental strand, 16203903 - 16203781
Alignment:
Q  577 gtgtcctctaaccgctccctaatcacacgcg-caaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtat 675  Q
    ||||||||||||||||||||||||||||||  | |||| |||||||  |||||  | ||||| ||||| ||||||||||||| ||| ||||| |||||||    
T  16203903 gtgtcctctaaccgctccctaatcacacgccacgaaacacggagacggttatcaacgcgagctcctatataagggtgacttttcttcacccttaaggtat 16203804  T
Q  676 gattcacttttcacaacacttta 698  Q
    | ||||||||||| |||||||||    
T  16203803 ggttcacttttcataacacttta 16203781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 530 - 670
Target Start/End: Complemental strand, 21161484 - 21161342
Alignment:
Q  530 gcaccgcatcaaagcacgccttcacgtgaggatcaccctgcatgcatgtgtcctctaaccgctccctaatcaca-----cgc-gcaaaacccggagacaa 623  Q
    |||||||||  |||||||||| | ||| ||||||||||| || |    ||||||| ||||||||||||||||||     ||| |||||||  ||| |||     
T  21161484 gcaccgcattcaagcacgcctccgcgttaggatcacccttcacg----tgtcctccaaccgctccctaatcacatcacacgctgcaaaacttggaaacag 21161389  T
Q  624 ttatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaa 670  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  21161388 ttatcttcacgagcgcctatgtaagggtgactttgcttcaccctcaa 21161342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 577 - 698
Target Start/End: Complemental strand, 16204472 - 16204350
Alignment:
Q  577 gtgtcctctaaccgctccctaatcacacgcgca--aaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggta 674  Q
    |||||||||||||||||||||||||||||| ||  |||| |||||||  |||||  | || || ||||| ||||||||| ||| ||| ||||| ||||||    
T  16204472 gtgtcctctaaccgctccctaatcacacgc-catgaaacacggagacggttatcaacgcgggctcctatataagggtgaattttcttcacccttaaggta 16204374  T
Q  675 tgattcacttttcacaacacttta 698  Q
    || |||||||||||||||||||||    
T  16204373 tggttcacttttcacaacacttta 16204350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 577 - 697
Target Start/End: Original strand, 26762821 - 26762942
Alignment:
Q  577 gtgtcctctaaccgctccctaatcacacgcgc-aaaacccggagacaattatcttcacga-gcgcctatgtaagggtgactttgcttaaccctcaaggta 674  Q
    |||||||||||||| ||||||||||||||| | |||||||||||    |||||  ||  | |||||||| || ||||| | |||||| ||||||||||||    
T  26762821 gtgtcctctaaccg-tccctaatcacacgccccaaaacccggaggtggttatcaacaacacgcgcctatatatgggtgtccttgcttcaccctcaaggta 26762919  T
Q  675 tgattcacttttcacaacacttt 697  Q
    |||||||||||||||||||||||    
T  26762920 tgattcacttttcacaacacttt 26762942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 640 - 693
Target Start/End: Original strand, 9135335 - 9135388
Alignment:
Q  640 ctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaaca 693  Q
    |||| ||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  9135335 ctatataagggtgaatttgcttcaccctcaaggtatgattcacttttcacaaca 9135388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 636 - 695
Target Start/End: Original strand, 43172006 - 43172065
Alignment:
Q  636 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacact 695  Q
    |||||||| |||||||||  |||||| |||||||| ||||||||||||||||||||||||    
T  43172006 gcgcctatataagggtgaagttgcttcaccctcaatgtatgattcacttttcacaacact 43172065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 636 - 693
Target Start/End: Complemental strand, 29373567 - 29373510
Alignment:
Q  636 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaaca 693  Q
    |||||||| | |||||||| |||||| ||||||||||||||||||| |||||||||||    
T  29373567 gcgcctatatgagggtgacattgcttcaccctcaaggtatgattcaattttcacaaca 29373510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 585 - 686
Target Start/End: Complemental strand, 13159532 - 13159433
Alignment:
Q  585 taaccgctccctaatcacacgc-gcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcact 683  Q
    |||||||||||||||||||||| |||||||||| || || ||| | ||||  |||||||| ||||||||| || |||| ||||||||||  |||||||||    
T  13159532 taaccgctccctaatcacacgcggcaaaacccgaaggcattta-cctcacatgcgcctatataagggtgatttagcttcaccctcaagg--tgattcact 13159436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 577 - 693
Target Start/End: Complemental strand, 5863368 - 5863251
Alignment:
Q  577 gtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttca-cgagcgcctatgtaagggtgactttgcttaaccctcaaggta 674  Q
    |||||||||||||| |||||||||||| || |  |||||||||| |  |||| | || || ||||||||  ||||||||| |||||  ||||||||||||    
T  5863368 gtgtcctctaaccg-tccctaatcacatgccgtgaaacccggaggcggttatttccaacgcgcgcctatacaagggtgacattgctccaccctcaaggta 5863270  T
Q  675 tgattcacttttcacaaca 693  Q
    |||||||||||| ||||||    
T  5863269 tgattcactttttacaaca 5863251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 697
Target Start/End: Original strand, 12265097 - 12265156
Alignment:
Q  638 gcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||| |||||||||  |||||| |||||||||||| |  |||||||||||||||||||    
T  12265097 gcctatataagggtgaacttgcttgaccctcaaggtacgcatcacttttcacaacacttt 12265156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 577 - 697
Target Start/End: Original strand, 3404772 - 3404893
Alignment:
Q  577 gtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtat 675  Q
    ||||||||||||| |||| ||||||||||| ||||||||| |||||  |||| |||||  |||||||| ||||||| | ||  ||| |||||||||||||    
T  3404772 gtgtcctctaaccactccttaatcacacgctgcaaaacccagagacggttattttcacacgcgcctatataagggtaatttaacttcaccctcaaggtat 3404871  T
Q  676 gattcacttttcacaacacttt 697  Q
    |||||| |||||||||||||||    
T  3404872 gattcatttttcacaacacttt 3404893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 636 - 697
Target Start/End: Complemental strand, 19305585 - 19305524
Alignment:
Q  636 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  19305585 gcgcctatttaagggtgaccttgcttcaccctcaaggtatgattcacttttcacaacacttt 19305524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 577 - 697
Target Start/End: Complemental strand, 14268612 - 14268491
Alignment:
Q  577 gtgtcctctaaccgctccctaatcacacgcgcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgctt-aaccctcaaggtat 675  Q
    ||||||||||||||||||||||||||||||   ||||||||| ||  |||||||   | | |||||| |||||||||||| |||| | |||||| | |||    
T  14268612 gtgtcctctaaccgctccctaatcacacgccataaacccggaaacggttatctttgtgcgtgcctatataagggtgacttagcttcacccctcacgatat 14268513  T
Q  676 gattcacttttcacaacacttt 697  Q
    ||||||||||||| ||||||||    
T  14268512 gattcacttttcaaaacacttt 14268491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 638 - 697
Target Start/End: Complemental strand, 20148434 - 20148375
Alignment:
Q  638 gcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||| |||||||||| |||||| ||| |||||||||||||||||||||||||||||||    
T  20148434 gcctatataagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacacttt 20148375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 638 - 697
Target Start/End: Original strand, 22184394 - 22184453
Alignment:
Q  638 gcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||| |||||||||| |||||| ||| |||||||||||||||||||||||||||||||    
T  22184394 gcctatataagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacacttt 22184453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 639 - 697
Target Start/End: Original strand, 15480314 - 15480372
Alignment:
Q  639 cctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    ||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||||    
T  15480314 cctatataagggtgacttagcttcactctcaaggtatgattcacttttcacaacacttt 15480372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 577 - 697
Target Start/End: Original strand, 34572904 - 34573025
Alignment:
Q  577 gtgtcctctaaccgctccctaatcacacg-cgcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtat 675  Q
    ||||||||||| | ||||||||||||||| |||| | |  |||||  |||||  ||||  |||||||| ||||||||||||  ||| |||||||| ||||    
T  34572904 gtgtcctctaatcactccctaatcacacgtcgcatatcatggagatgattattctcacacgcgcctatataagggtgacttaacttcaccctcaatgtat 34573003  T
Q  676 gattcacttttcacaacacttt 697  Q
    |||||||||||||| |||||||    
T  34573004 gattcacttttcaccacacttt 34573025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 639 - 697
Target Start/End: Complemental strand, 18147424 - 18147366
Alignment:
Q  639 cctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    ||||| |||||||||| |||||| ||||| ||||||||| |||||||||||||||||||    
T  18147424 cctatataagggtgacattgcttcaccctaaaggtatgagtcacttttcacaacacttt 18147366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 574 - 697
Target Start/End: Complemental strand, 33597045 - 33596921
Alignment:
Q  574 catgtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttcac-gagcgcctatgtaagggtgactttgcttaaccctcaag 671  Q
    |||||||||||||||||| ||||||||| |||| ||| || |||| |||||||||  |||  | |||||||| |||| ||||  |||||| | |||||||    
T  33597045 catgtgtcctctaaccgc-ccctaatcatacgccgcataatccggtgacaattatgctcaaagcgcgcctatataagagtgaacttgcttcatcctcaag 33596947  T
Q  672 gtatgattcacttttcacaacacttt 697  Q
    |||||||||  |||||||||||||||    
T  33596946 gtatgattccattttcacaacacttt 33596921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 596 - 698
Target Start/End: Original strand, 689786 - 689889
Alignment:
Q  596 taatcacacgc-gcaaaacccggagacaattatcttca-cgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaaca 693  Q
    ||||||||||| ||||||| ||||||| |||||  ||| || |||||||| |||||||||| ||| | | || |||||||| ||||||||||||||||||    
T  689786 taatcacacgccgcaaaactcggagacgattatgatcaacgtgcgcctatataagggtgaccttgatcagcc-tcaaggtacgattcacttttcacaaca 689884  T
Q  694 cttta 698  Q
    |||||    
T  689885 cttta 689889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 645 - 697
Target Start/End: Original strand, 12203617 - 12203669
Alignment:
Q  645 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    ||||||||||||  ||| |||||||| ||||||||||||||||||||||||||    
T  12203617 taagggtgacttaacttcaccctcaaagtatgattcacttttcacaacacttt 12203669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 577 - 694
Target Start/End: Complemental strand, 11087683 - 11087565
Alignment:
Q  577 gtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttca-cgagcgcctatgtaagggtgactttgcttaaccctcaaggta 674  Q
    |||||||||||||| ||| |||| |||||| ||| || ||||||||| ||||  ||| || || ||||| |||||||||  ||| || | ||||||||||    
T  11087683 gtgtcctctaaccg-tccttaattacacgccgcataatccggagacagttatgctcaacgcgcacctatataagggtgaacttgtttcatcctcaaggta 11087585  T
Q  675 tgattcacttttcacaacac 694  Q
    ||||||||||||||||||||    
T  11087584 tgattcacttttcacaacac 11087565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 636 - 691
Target Start/End: Complemental strand, 30681113 - 30681058
Alignment:
Q  636 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaa 691  Q
    |||||||| ||| |||||| |||||| | |||||||||||||||||||||||||||    
T  30681113 gcgcctatctaaaggtgacattgcttcatcctcaaggtatgattcacttttcacaa 30681058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 630 - 687
Target Start/End: Original strand, 9291984 - 9292041
Alignment:
Q  630 tcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttc 687  Q
    ||||| |||||||| ||| ||||| || |||| |||||||||||||||||||||||||    
T  9291984 tcacgtgcgcctatataaaggtgagttagcttcaccctcaaggtatgattcacttttc 9292041  T

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Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 640 - 697
Target Start/End: Original strand, 10115659 - 10115716
Alignment:
Q  640 ctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||| ||||| |||||| |||| |||||| |||||||||||||||||||||| |||||    
T  10115659 ctatataaggctgacttagcttcaccctcgaggtatgattcacttttcacaaaacttt 10115716  T

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Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 636 - 697
Target Start/End: Complemental strand, 16131089 - 16131028
Alignment:
Q  636 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||||| ||||||| |  ||| || |||||||||||||||||||| ||||||||||||||    
T  16131089 gcgcctatataagggtaaacttgtttcaccctcaaggtatgattcacgtttcacaacacttt 16131028  T

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Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 637 - 698
Target Start/End: Complemental strand, 17380217 - 17380156
Alignment:
Q  637 cgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttta 698  Q
    ||||||| |||||||||| |||| | | ||| |||||| |||||||||||||||||||||||    
T  17380217 cgcctatataagggtgaccttgcgtcaacctgaaggtaagattcacttttcacaacacttta 17380156  T

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Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 651 - 695
Target Start/End: Original strand, 4251029 - 4251073
Alignment:
Q  651 tgactttgcttaaccctcaaggtatgattcacttttcacaacact 695  Q
    ||||||||||| ||||||||| ||||||| |||||||||||||||    
T  4251029 tgactttgcttcaccctcaagatatgatttacttttcacaacact 4251073  T

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Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 685
Target Start/End: Original strand, 27772537 - 27772584
Alignment:
Q  638 gcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttt 685  Q
    |||||| |||||||||| |||||| ||| |||||||||||||||||||    
T  27772537 gcctatataagggtgaccttgcttcaccttcaaggtatgattcacttt 27772584  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 697
Target Start/End: Original strand, 31423807 - 31423868
Alignment:
Q  636 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||||| ||||||||   |||||| |||||||||  ||||||||||| ||||||||||||    
T  31423807 gcgcctatataagggtgcacttgcttcaccctcaagacatgattcacttctcacaacacttt 31423868  T

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Target: scaffold0023 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 574 - 697
Target Start/End: Original strand, 95717 - 95841
Alignment:
Q  574 catgtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattat-cttcacgagcgcctatgtaagggtgactttgcttaaccctcaag 671  Q
    ||||||||||||||||| ||||||||||||||| ||||||| |||||  |  ||| |   ||| | |||||| |||||||||| |||||| ||||| |||    
T  95717 catgtgtcctctaaccg-tccctaatcacacgccgcaaaactcggaggtagatattccaaacgcgtgcctatataagggtgacgttgcttcaccctgaag 95815  T
Q  672 gtatgattcacttttcacaacacttt 697  Q
    ||||||||||||||||||||||||||    
T  95816 gtatgattcacttttcacaacacttt 95841  T

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Target: scaffold0054 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 638 - 697
Target Start/End: Original strand, 68774 - 68833
Alignment:
Q  638 gcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||| |||||||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  68774 gcctatataagggtgaccttgcttctccctcaaggtatgattcacttttcacaacacttt 68833  T

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Target: scaffold0291 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 639 - 697
Target Start/End: Original strand, 15403 - 15461
Alignment:
Q  639 cctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    ||||| |||||||||  |||||| |||||||||||||||||||||||||||||||||||    
T  15403 cctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacacttt 15461  T

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Target: scaffold0291; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 8574 - 8608
Alignment:
Q  663 accctcaaggtatgattcacttttcacaacacttt 697  Q
    ||||| |||||||||||||||||||||||||||||    
T  8574 acccttaaggtatgattcacttttcacaacacttt 8608  T

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Target: scaffold0360 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 639 - 697
Target Start/End: Complemental strand, 14040 - 13982
Alignment:
Q  639 cctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    ||||| |||||||||  |||||| |||||||||||||||||||||| ||||||||||||    
T  14040 cctatataagggtgatcttgcttcaccctcaaggtatgattcacttctcacaacacttt 13982  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 698
Target Start/End: Original strand, 120981 - 121043
Alignment:
Q  636 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttta 698  Q
    |||||||| ||||||||| ||||||| ||||||||||||    ||||||||||||||||||||    
T  120981 gcgcctatataagggtgaatttgcttcaccctcaaggtacacatcacttttcacaacacttta 121043  T

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Target: scaffold0140 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 697
Target Start/End: Complemental strand, 6445 - 6358
Alignment:
Q  611 aacccggagacaattatcttca-cgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||||||||  |||| |||| || |||||||| ||||| |||  |||||| || ||||||||| || |||||||||||||||||||    
T  6445 aacccggagacggttatgttcaacgtgcgcctatataaggatgaacttgcttcacgctcaaggtacgactcacttttcacaacacttt 6358  T

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Target: scaffold0057 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 697
Target Start/End: Original strand, 73792 - 73833
Alignment:
Q  656 ttgcttaaccctcaaggtatgattcacttttcacaacacttt 697  Q
    |||||| ||||| ||||||||||| |||||||||||||||||    
T  73792 ttgcttcaccctgaaggtatgatttacttttcacaacacttt 73833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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