View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8047_low_13 (Length: 346)

Name: NF8047_low_13
Description: NF8047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8047_low_13
NF8047_low_13
[»] chr2 (3 HSPs)
chr2 (1-327)||(36738440-36738766)
chr2 (200-330)||(35981343-35981487)
chr2 (120-180)||(20067012-20067072)
[»] chr6 (2 HSPs)
chr6 (95-180)||(21603825-21603910)
chr6 (98-143)||(32643351-32643396)
[»] chr7 (2 HSPs)
chr7 (93-180)||(5394766-5394853)
chr7 (107-180)||(22726288-22726360)
[»] chr8 (1 HSPs)
chr8 (107-180)||(12715835-12715909)
[»] chr1 (1 HSPs)
chr1 (97-180)||(17513040-17513123)
[»] chr3 (1 HSPs)
chr3 (82-180)||(12672875-12672963)


Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 36738440 - 36738766
Alignment:
Q  1 ttttgtagaaaattgcttgacacaataaagtagactaaaatacactagttaaatatcaaaatacccctcattagttcggcgcctctgcattagtagaagc 100  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||    
T  36738440 ttttgtagaaaattgcttgacacaataaagaatactaaaatacactagttaaatatcaaaatacccctcatcagttcggcacctctgcattggtagaagc 36738539  T
Q  101 ttcattttctggacatgtaatgtgttttaaacacataacacaatctatttgaatattttcacaacaacaacaataataaactattaccagcaacactcat 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||  |||||||||||| ||| |||||||||| ||||    
T  36738540 ttcattttctggacatgttatgtgttttaaacacataacacaatctgtctgaatattttcacaacacaaacaataataaattatcaccagcaacattcat 36738639  T
Q  201 tctttatatctaacacaatataacaatttacaaataaagatataaacaacacaacatgcaaatgcaagcatgaatccaaccaactacaacttcagaattg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36738640 tctttatatctaacacaatataacaatttacaaataaagatataaacaacacaacatgcaaatgcaagcatgaatccaaccaactacaacttcagaattg 36738739  T
Q  301 acatgcatcgttcaaacaatactacaa 327  Q
    |||||||||||||||||||||||||||    
T  36738740 acatgcatcgttcaaacaatactacaa 36738766  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 200 - 330
Target Start/End: Complemental strand, 35981487 - 35981343
Alignment:
Q  200 ttctttatatctaacacaatataacaatttacaaataaagatataaacaacacaacatgcaaat------gcaagcatgaatcc--------aaccaact 285  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||  ||||||||      ||||||||||||||        |||  |||    
T  35981487 ttctttatatctaacacaatttaacaatttacagataaagatataaacaacacagaatgcaaatgcaaatgcaagcatgaatccttgatgcaaacagact 35981388  T
Q  286 acaacttcagaattgacatgcatcgttcaaacaatactacaattt 330  Q
    |||| ||||| ||||||||||||| ||||||||||||||||||||    
T  35981387 acaatttcagcattgacatgcatcattcaaacaatactacaattt 35981343  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 20067012 - 20067072
Alignment:
Q  120 atgtgttttaaacacataacacaatctatttgaatattttcacaacaacaacaataataaa 180  Q
    |||||||||||||| ||||||||| |||||  |||||||||||| ||||||||||||||||    
T  20067012 atgtgttttaaacaaataacacaacctattccaatattttcacatcaacaacaataataaa 20067072  T

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Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 21603910 - 21603825
Alignment:
Q  95 agaagcttcattttctggacatgtaatgtgttttaaacacataacacaatctatttgaatattttcacaacaacaacaataataaa 180  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||  | |||||||||||||||||||| |  |||||||||    
T  21603910 agaagcttcattttctggacctgttatgtgttttaaacacataacacaacttgtttgaatattttcacaacaatagtaataataaa 21603825  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 32643396 - 32643351
Alignment:
Q  98 agcttcattttctggacatgtaatgtgttttaaacacataacacaa 143  Q
    |||||||||| ||| || |||||||||||||||||||| |||||||    
T  32643396 agcttcatttcctgaacctgtaatgtgttttaaacacaaaacacaa 32643351  T

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Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 5394766 - 5394853
Alignment:
Q  93 gtagaagcttcattttctggacatgtaatgtgttttaaacacataacacaatctatttgaatattttcacaacaacaacaataataaa 180  Q
    |||||| ||||||||||||||  ||| |||||||||||||||||||||||| || |||||||||||| ||| || |||||||||||||    
T  5394766 gtagaaacttcattttctggatctgttatgtgttttaaacacataacacaacctgtttgaatatttttacatcagcaacaataataaa 5394853  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 22726288 - 22726360
Alignment:
Q  107 ttctggacatgtaatgtgttttaaacacataacacaatctatttgaatattttcacaacaacaacaataataaa 180  Q
    |||||||| ||| ||||||||||| ||||||| |||| |||||  |||||||||||| ||||||||||||||||    
T  22726288 ttctggacctgttatgtgttttaa-cacataatacaacctattccaatattttcacatcaacaacaataataaa 22726360  T

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Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 12715835 - 12715909
Alignment:
Q  107 ttctggacatgtaatgtgttttaaacacataacac-aatctatttgaatattttcacaacaacaacaataataaa 180  Q
    |||||||| ||||||||||| |||||||||||||| || |||||| |||||||||||| ||||||||||||||||    
T  12715835 ttctggacctgtaatgtgttataaacacataacacaaacctatttcaatattttcacatcaacaacaataataaa 12715909  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 97 - 180
Target Start/End: Original strand, 17513040 - 17513123
Alignment:
Q  97 aagcttcattttctggacatgtaatgtgttttaaacacataacacaatctatttgaatattttcacaacaacaacaataataaa 180  Q
    |||||||||||||  ||| ||| ||||||||||||| |||| ||||| ||||| |||||||||||||  |||||||||||||||    
T  17513040 aagcttcattttcgagacctgttatgtgttttaaacgcatagcacaacctattcgaatattttcacattaacaacaataataaa 17513123  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 12672963 - 12672875
Alignment:
Q  82 cctctgcattagtagaagcttcattttctggacatgtaatgtgttttaaacacataacacaatctatttgaatattttcacaacaacaacaataataaa 180  Q
    |||||||||| |||||||||||||| |||||||||||||          |||||||||||||  | |||||||||||||||| ||||| ||||||||||    
T  12672963 cctctgcattggtagaagcttcattctctggacatgtaa----------acacataacacaacttgtttgaatattttcacatcaacagcaataataaa 12672875  T

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