View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8047_low_16 (Length: 318)

Name: NF8047_low_16
Description: NF8047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8047_low_16
NF8047_low_16
[»] chr3 (9 HSPs)
chr3 (1-125)||(8349969-8350094)
chr3 (6-89)||(8260574-8260657)
chr3 (1-74)||(8252867-8252940)
chr3 (189-234)||(8349624-8349669)
chr3 (3-63)||(8352758-8352818)
chr3 (3-77)||(8334018-8334093)
chr3 (3-78)||(8265551-8265626)
chr3 (3-78)||(8258478-8258553)
chr3 (3-49)||(8356339-8356385)
[»] chr1 (1 HSPs)
chr1 (199-297)||(44799682-44799780)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 8350094 - 8349969
Alignment:
Q  1 ggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcatgtagtattaatttacatctgct 100  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| | | ||||||||||||||||    
T  8350094 ggaaggaaaaatcaaagggagctccaattatagtttcttatttccctgttaactattatccctcacgcttgtagtcatgcaatgttaatttacatctgct 8349995  T
Q  101 actt-atcaagaagagtgtaatcaac 125  Q
    |||| || |  |||||||||||||||    
T  8349994 acttaattatcaagagtgtaatcaac 8349969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 8260657 - 8260574
Alignment:
Q  6 gaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcatgtagtattaat 89  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| ||| || ||||||||||| |||||||||    
T  8260657 gaaaaatcaaagagagctccaattgtagtttcttatttccctgttaactcttatctctcacgtttgtagtcatgcagtattaat 8260574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8252940 - 8252867
Alignment:
Q  1 ggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtag 74  Q
    ||||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||| || ||| |||||||||    
T  8252940 ggaaggaaaaatcaaagggagctccaattgcagtttcttatttctctgttaacaattgtctctcacgcttgtag 8252867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 8349669 - 8349624
Alignment:
Q  189 ttcaatgattggttgcttgcggcacaagaatctggttcagcttaaa 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8349669 ttcaatgattggttgcttgcggcacaagaatctggttcagcttaaa 8349624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 8352818 - 8352758
Alignment:
Q  3 aaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccct 63  Q
    ||||||||||| || |||||| | |||||||||||||||||||||||||||||||||||||    
T  8352818 aaggaaaaatctaatggagcttcaattgtagtttcttatttccctgttaactattatccct 8352758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 8334093 - 8334018
Alignment:
Q  3 aaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattat-ccctcgcgcttgtagtca 77  Q
    |||||||||||||| |||| ||| |||||||||||||||||||  |||||||||||| ||||| ||||||||||||    
T  8334093 aaggaaaaatcaaaaggagttccaattgtagtttcttatttcctcgttaactattatcccctcacgcttgtagtca 8334018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 8265626 - 8265551
Alignment:
Q  3 aaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcat 78  Q
    ||||||||||||||||||||||| |||||||| | | ||||||||| ||||| ||||| ||| || ||||||||||    
T  8265626 aaggaaaaatcaaagggagctccaattgtagtatatcatttccctgctaactcttatctctctcgtttgtagtcat 8265551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 8258553 - 8258478
Alignment:
Q  3 aaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcat 78  Q
    ||||||||||||||||||||||| |||||||| | | ||||||||  ||||| ||||| ||| || ||||||||||    
T  8258553 aaggaaaaatcaaagggagctccaattgtagtatatcatttccctactaactcttatctctcacgtttgtagtcat 8258478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 8356385 - 8356339
Alignment:
Q  3 aaggaaaaatcaaagggagctccgattgtagtttcttatttccctgt 49  Q
    ||||||||||||| ||||||||| ||||||||| |||||||||||||    
T  8356385 aaggaaaaatcaatgggagctccaattgtagttccttatttccctgt 8356339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 199 - 297
Target Start/End: Original strand, 44799682 - 44799780
Alignment:
Q  199 ggttgcttgcggcacaagaatctggttcagcttaaaggacagtgttgtgaagggaatgaactggttttggtttatgagtatttaccatatggaagcctt 297  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||    
T  44799682 ggttgcttgcggcacaagaatctggttcagcttaaagggtggtgttgtgaagggaatgaattggttttggtttatgagtatctaccaaatggaagcctt 44799780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University