View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8047_low_2 (Length: 549)

Name: NF8047_low_2
Description: NF8047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8047_low_2
NF8047_low_2
[»] scaffold0149 (1 HSPs)
scaffold0149 (170-534)||(25976-26340)
[»] chr3 (14 HSPs)
chr3 (233-525)||(797253-797547)
chr3 (35-230)||(2506074-2506272)
chr3 (339-452)||(669098-669211)
chr3 (357-435)||(3400382-3400460)
chr3 (339-452)||(2506493-2506606)
chr3 (366-420)||(10925931-10925985)
chr3 (344-409)||(3259336-3259401)
chr3 (475-510)||(9507753-9507788)
chr3 (475-510)||(9515728-9515763)
chr3 (233-279)||(9507555-9507601)
chr3 (233-279)||(9515530-9515576)
chr3 (469-525)||(2506625-2506682)
chr3 (343-420)||(10946134-10946211)
chr3 (357-417)||(10915943-10916003)
[»] chr6 (1 HSPs)
chr6 (344-450)||(18715164-18715270)
[»] chr8 (2 HSPs)
chr8 (342-528)||(24061469-24061656)
chr8 (233-337)||(22931005-22931110)
[»] scaffold0888 (1 HSPs)
scaffold0888 (372-444)||(3031-3103)
[»] scaffold2125 (1 HSPs)
scaffold2125 (366-452)||(740-825)
[»] chr2 (1 HSPs)
chr2 (354-409)||(29797342-29797397)
[»] chr7 (2 HSPs)
chr7 (367-420)||(41621155-41621208)
chr7 (384-420)||(1865997-1866033)


Alignment Details
Target: scaffold0149 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 170 - 534
Target Start/End: Complemental strand, 26340 - 25976
Alignment:
Q  170 cattacaagtttgtagggatctatattttcatatcccttaaaagtgaaaaatgtctaaaagcctagaagtaacaaaactatttggtaaacttacctatta 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26340 cattacaagtttgtagggatctatattttcatatcccttaaaagtgaaaaatgtctaaaagcctagaagtaacaaaactatttggtaaacttacctatta 26241  T
Q  270 aagatattatttaagtggtatgatgggaaagaaaatatgagatgccaaaattgaagattatggggataaatctaaaatatagagaaaagaagatagtcta 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26240 aagatattatttaagtggtatgatgggaaagaaaatatgagatgccaaaattgaagattatggggattaatctaaaatatagagaaaagaagatagtcta 26141  T
Q  370 aataatatttgttgctgtcttatttcatttcattatcattattttagagtaaaaatatatgactaataagttcttaaaattatnnnnnnnnnnnnnntta 469  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||              |||    
T  26140 aataatatttattgccgtcttatttcatttcattatcattattttagagtaaaaatatataactaataagttcttaaaattataaaaagaaaaaaaatta 26041  T
Q  470 atttattggttggcaagaaaataactaaatgacagcttgtgaatgttgtagcagagcattgatgt 534  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26040 atttattggttggcatgaaaataactaaatgacagcttgtgaatgttgtagcagagcatttatgt 25976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 233 - 525
Target Start/End: Complemental strand, 797547 - 797253
Alignment:
Q  233 tagaagtaacaaaactatttggtaaacttacctattaaagatattatt-taagtggtatgatgggaaagaaaatatgagatgccaaaattgaagattatg 331  Q
    |||||||| ||||||||||| ||||| |||  ||||||| |||||||  |||| |||||| ||||||||||||| ||| |||||| |||||||| | |||    
T  797547 tagaagtagcaaaactattttgtaaaattaaatattaaacatattataataagcggtatggtgggaaagaaaatgtgatatgccagaattgaagttcatg 797448  T
Q  332 gggataaatctaaaatatagagaaaagaagatagtctaaataatatttgttgctgtcttatttcatttcattatcattattttagagtaaaaatatatga 431  Q
    | |||| |||||||||| | ||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||      
T  797447 gtgatatatctaaaataaaaagagaagaagataatctaaataatatttgttgctgtcttatttcatttcattgtcattattttagagtacaaatatatag 797348  T
Q  432 ctaataagttcttaaaattatnnnnnnnnnnnnnnttaatttattggttggcaagaaaataactaaatgacagcttgtg-aatgttgtagcagag 525  Q
    |||| |||||||| |||||||              | ||||||||||||||||||||| |||| |||||||| |||||| |||||||||||||||    
T  797347 ctaaaaagttcttgaaattataaaaagaaaaaaaatcaatttattggttggcaagaaattaacgaaatgacaccttgtgaaatgttgtagcagag 797253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 35 - 230
Target Start/End: Original strand, 2506074 - 2506272
Alignment:
Q  35 ggtaccgcggtcaaccgtcgcagagaaagcctcagccgcactgaagttcctcatccactgtattggtttgctgcagcacgagcacaacaaccgcatcatc 134  Q
    ||||||| |||||||| |||||||| || ||||| ||| || |||||||||||||||||  ||||||||| || |||| | |||||||||| ||  ||||    
T  2506074 ggtaccgtggtcaaccatcgcagagcaatcctcaaccgaaccgaagttcctcatccactacattggtttgttgtagcatgggcacaacaactgcgccatc 2506173  T
Q  135 cttaagctatgttcccacacagatcaacattagatcattacaagtttgtaggga---tctatattttcatatcccttaaaagtgaaaaatgtctaaaag 230  Q
    |||||||| |||||||| |||| ||||||||| ||||||||| |||||||| ||   ||||||||||||||||||||||||| ||| ||||||||||||    
T  2506174 cttaagctttgttcccagacaggtcaacattaaatcattacacgtttgtagtgatgttctatattttcatatcccttaaaagcgaacaatgtctaaaag 2506272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 339 - 452
Target Start/End: Complemental strand, 669211 - 669098
Alignment:
Q  339 atctaaaatatagagaaaagaagatagtctaaataatatttgttgctgtcttatttcatttcattatcattattttagagtaaaaatatatgactaataa 438  Q
    |||||||||| |||||  |||| ||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||| ||| | ||    
T  669211 atctaaaataaagagaggagaatataatctagataatatttgttgttgtcttatttcatttcattatcattattttagagtgcaaatatataactcaaaa 669112  T
Q  439 gttcttaaaattat 452  Q
    |||||| |||||||    
T  669111 gttcttgaaattat 669098  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 3400382 - 3400460
Alignment:
Q  357 agaagatagtctaaataatatttgttgctgtcttatttcatttcattatcattattttagagtaaaaatatatgactaa 435  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||| |||||    
T  3400382 agaagataatttaaataatatttgttgctgtcttatttcatttcattatcattattttatagttcaaatatataactaa 3400460  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 339 - 452
Target Start/End: Original strand, 2506493 - 2506606
Alignment:
Q  339 atctaaaatatagagaaaagaagatagtctaaataatatttgttgctgtcttatttcatttcattatcattattttagagtaaaaatatatgactaataa 438  Q
    ||||||||||  |||| ||||||||| | |||| |||||  ||||||||||| ||||||||||||||||||||||||||||   ||||| | ||||| ||    
T  2506493 atctaaaatagggagagaagaagataatgtaaacaatatccgttgctgtcttgtttcatttcattatcattattttagagtgctaatatctaactaaaaa 2506592  T
Q  439 gttcttaaaattat 452  Q
    |||||| |||||||    
T  2506593 gttcttgaaattat 2506606  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 420
Target Start/End: Original strand, 10925931 - 10925985
Alignment:
Q  366 tctaaataatatttgttgctgtcttatttcatttcattatcattattttagagta 420  Q
    |||||||||||||| |||||||||| ||| ||||||||| |||||| ||||||||    
T  10925931 tctaaataatatttattgctgtcttgtttaatttcattaccattatcttagagta 10925985  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 409
Target Start/End: Original strand, 3259336 - 3259401
Alignment:
Q  344 aaatatagagaaaagaagatagtctaaataatatttgttgctgtcttatttcatttcattatcatt 409  Q
    ||||| ||||| ||||||| | | |||| |||||||||||||||||||||| | ||||||||||||    
T  3259336 aaataaagagagaagaagacaatataaacaatatttgttgctgtcttatttaagttcattatcatt 3259401  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 510
Target Start/End: Original strand, 9507753 - 9507788
Alignment:
Q  475 ttggttggcaagaaaataactaaatgacagcttgtg 510  Q
    |||| |||||||||||||||||||||||||||||||    
T  9507753 ttgggtggcaagaaaataactaaatgacagcttgtg 9507788  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 510
Target Start/End: Original strand, 9515728 - 9515763
Alignment:
Q  475 ttggttggcaagaaaataactaaatgacagcttgtg 510  Q
    |||| |||||||||||||||||||||||||||||||    
T  9515728 ttgggtggcaagaaaataactaaatgacagcttgtg 9515763  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 9507555 - 9507601
Alignment:
Q  233 tagaagtaacaaaactatttggtaaacttacctattaaagatattat 279  Q
    |||||||||||||||| ||| ||||||||| |||||| |||||||||    
T  9507555 tagaagtaacaaaactgttttgtaaacttaactattacagatattat 9507601  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 9515530 - 9515576
Alignment:
Q  233 tagaagtaacaaaactatttggtaaacttacctattaaagatattat 279  Q
    |||||||||||||||| ||| ||||||||| |||||| |||||||||    
T  9515530 tagaagtaacaaaactgttttgtaaacttaactattacagatattat 9515576  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 525
Target Start/End: Original strand, 2506625 - 2506682
Alignment:
Q  469 aatttattggttggcaagaaaataactaaatgacagcttgt-gaatgttgtagcagag 525  Q
    |||||||||| || |||||||||||||||||||||| || | |||| |||||||||||    
T  2506625 aatttattgggtgacaagaaaataactaaatgacagtttatggaatattgtagcagag 2506682  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 420
Target Start/End: Original strand, 10946134 - 10946211
Alignment:
Q  343 aaaatatagagaaaagaagatagtctaaataatatttgttgctgtcttatttcatttcattatcattattttagagta 420  Q
    |||||| ||||| || |||| | | |||||||||||| ||| |||||| ||| ||||||||| |||||| ||||||||    
T  10946134 aaaataaagagataataagacaatttaaataatatttattgatgtcttgtttgatttcattaccattatcttagagta 10946211  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 357 - 417
Target Start/End: Original strand, 10915943 - 10916003
Alignment:
Q  357 agaagatagtctaaataatatttgttgctgtcttatttcatttcattatcattattttaga 417  Q
    |||||| | |||||||||||||||||||||  |||||| ||||||||| || ||| |||||    
T  10915943 agaagacaatctaaataatatttgttgctgctttatttaatttcattaccactatcttaga 10916003  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 344 - 450
Target Start/End: Complemental strand, 18715270 - 18715164
Alignment:
Q  344 aaatatagagaaaagaagatagtctaaataatatttgttgctgtcttatttcatttcattatcattattttagagtaaaaatatatgactaataagttct 443  Q
    ||||| ||||| ||||| ||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||  |||||||   |||| |||||||    
T  18715270 aaataaagagagaagaatataatctaaataatatgtgctgctgtcttatttcatttcattatcattattttagagtgcaaatataaatctaaaaagttct 18715171  T
Q  444 taaaatt 450  Q
    | |||||    
T  18715170 tcaaatt 18715164  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 342 - 528
Target Start/End: Complemental strand, 24061656 - 24061469
Alignment:
Q  342 taaaatatagagaa-aagaagatagtctaaataatatttgttgctgtcttatttcatttcattatcattattttagagtaaaaatatatgactaataagt 440  Q
    |||||||||||||| ||||||||| | |||||||||||||||    |||||||| ||||||||||||||| |||| |||| |||||||| ||||| ||||    
T  24061656 taaaatatagagaagaagaagataatataaataatatttgttc---tcttattttatttcattatcattaatttacagtataaatatataactaaaaagt 24061560  T
Q  441 tcttaaaa--ttatnnnnnnnnnnnnnnttaatttattggttggcaagaaaataactaaatgacagcttgtg-aatgttgtagcagagcat 528  Q
    |||| |||  |||               | |||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||    
T  24061559 tcttgaaattttagaaagaaaaaagaaatcaatttattggttggcaagaaaataactaaatgacggcttgtgcaatattgtagcagagcat 24061469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 337
Target Start/End: Original strand, 22931005 - 22931110
Alignment:
Q  233 tagaagtaacaaaactatttggtaaacttacctattaaagatattat-ttaagtggtatgatgggaaagaaaatatgagatgccaaaattgaagattatg 331  Q
    |||||||||||||||||||| | ||||||| ||||||||||||||||  | | ||||||| ||| ||||||||| ||| || || |||||| || | |||    
T  22931005 tagaagtaacaaaactattttgcaaacttaactattaaagatattataatgattggtatggtggaaaagaaaatgtgatatccctaaattggagttcatg 22931104  T
Q  332 gggata 337  Q
    ||||||    
T  22931105 gggata 22931110  T

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Target: scaffold0888 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 444
Target Start/End: Complemental strand, 3103 - 3031
Alignment:
Q  372 taatatttgttgctgtcttatttcatttcattatcattattttagagtaaaaatatatgactaataagttctt 444  Q
    ||||||||||| || ||||| ||||||||||||||| |||||||||||| |||||||| ||||| ||||||||    
T  3103 taatatttgtttctatcttaattcatttcattatcaatattttagagtacaaatatataactaaaaagttctt 3031  T

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Target: scaffold2125 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold2125
Description:

Target: scaffold2125; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 366 - 452
Target Start/End: Complemental strand, 825 - 740
Alignment:
Q  366 tctaaataatatttgttgctgtcttatttcatttcattatcattattttagagtaaaaatatatgactaataagttcttaaaattat 452  Q
    |||| ||||||||||||| |||| ||||| |||||||||||||||||||||||| | ||||||  ||||| |||||||| |||||||    
T  825 tctacataatatttgttgttgtcatattttatttcattatcattattttagagt-acaatataaaactaaaaagttcttgaaattat 740  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 409
Target Start/End: Complemental strand, 29797397 - 29797342
Alignment:
Q  354 aaaagaagatagtctaaataatatttgttgctgtcttatttcatttcattatcatt 409  Q
    ||||||||| | |||||||||||||| ||||| |||||||||||||||||||||||    
T  29797397 aaaagaagacaatctaaataatattttttgctatcttatttcatttcattatcatt 29797342  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 41621155 - 41621208
Alignment:
Q  367 ctaaataatatttgttgctgtcttatttcatttcattatcattattttagagta 420  Q
    ||||||||||||| |||  ||||||||||||||||||| ||| |||||||||||    
T  41621155 ctaaataatattttttgacgtcttatttcatttcattagcataattttagagta 41621208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 420
Target Start/End: Original strand, 1865997 - 1866033
Alignment:
Q  384 ctgtcttatttcatttcattatcattattttagagta 420  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  1865997 ctgtcttatttcatttcattgtcaatattttagagta 1866033  T

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