View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8047_low_20 (Length: 262)

Name: NF8047_low_20
Description: NF8047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8047_low_20
NF8047_low_20
[»] chr5 (4 HSPs)
chr5 (17-240)||(1491686-1491904)
chr5 (143-240)||(1504450-1504547)
chr5 (148-240)||(1477685-1477777)
chr5 (155-240)||(1481796-1481881)
[»] chr1 (3 HSPs)
chr1 (153-240)||(44128264-44128351)
chr1 (153-240)||(44132469-44132556)
chr1 (153-240)||(44140891-44140978)
[»] chr7 (5 HSPs)
chr7 (150-240)||(5290078-5290168)
chr7 (150-240)||(5302147-5302237)
chr7 (150-240)||(5309784-5309874)
chr7 (150-240)||(5283959-5284049)
chr7 (150-240)||(5314601-5314691)
[»] chr3 (3 HSPs)
chr3 (157-237)||(37863716-37863796)
chr3 (157-213)||(37859726-37859782)
chr3 (157-213)||(39029635-39029691)
[»] chr2 (1 HSPs)
chr2 (148-240)||(24165431-24165523)


Alignment Details
Target: chr5 (Bit Score: 139; Significance: 8e-73; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 1491904 - 1491686
Alignment:
Q  17 ataatactgctatttgttgccttnnnnnnnntactcctatttgttnnnnnnnttgttggacatacacaatgtatgctgtacccttccgatcaaagttttt 116  Q
    |||||||||||||||||||||||        ||||||||||||||       |||||||||||||||||||||||||||||||||| |||||||||||||    
T  1491904 ataatactgctatttgttgccttaaaaaaaatactcctatttgttaaaaaaattgttggacatacacaatgtatgctgtacccttctgatcaaagttttt 1491805  T
Q  117 acatactcaaaggttacagcataaataatataaaagaatacttacacatgcgttggaatttttctttgagctcagttttgtgttcactatttgtgatttt 216  Q
    |||||||||||||||||| |||||||||||     | |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  1491804 acatactcaaaggttacaacataaataata-----gcatacttacacatgcgttgaaatttttctttgagctcagttttgtgttcgctatttgtgatttt 1491710  T
Q  217 aaagtaaaaatcaggatatgtgct 240  Q
    ||||||||||||||||||||||||    
T  1491709 aaagtaaaaatcaggatatgtgct 1491686  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 1504547 - 1504450
Alignment:
Q  143 aatataaaagaatacttacacatgcgttggaatttttctttgagctcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgct 240  Q
    ||||| ||| || |||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||| ||||||| |||||||||||||||||    
T  1504547 aatatgaaaaaacacttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgct 1504450  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 1477777 - 1477685
Alignment:
Q  148 aaaagaatacttacacatgcgttggaatttttctttgagctcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgct 240  Q
    |||||||||||||||||||||||| ||||||||||| || |||  |||||| ||||| ||||||||||| |||||||||||||||||||||||    
T  1477777 aaaagaatacttacacatgcgttgaaatttttctttaagttcaactttgtgctcactgtttgtgattttgaagtaaaaatcaggatatgtgct 1477685  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 1481881 - 1481796
Alignment:
Q  155 tacttacacatgcgttggaatttttctttgagctcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgct 240  Q
    ||||||||||||||||| |||||||||||||| ||   ||| || ||||| |||||||||||||||||||||||||||||||||||    
T  1481881 tacttacacatgcgttgaaatttttctttgagttcgactttatgctcactgtttgtgattttaaagtaaaaatcaggatatgtgct 1481796  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 44128351 - 44128264
Alignment:
Q  153 aatacttacacatgcgttggaatttttctttgagctcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgct 240  Q
    ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||    
T  44128351 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgct 44128264  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 44132556 - 44132469
Alignment:
Q  153 aatacttacacatgcgttggaatttttctttgagctcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgct 240  Q
    ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||    
T  44132556 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgct 44132469  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 44140978 - 44140891
Alignment:
Q  153 aatacttacacatgcgttggaatttttctttgagctcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgct 240  Q
    ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||    
T  44140978 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgct 44140891  T

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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 5290078 - 5290168
Alignment:
Q  150 aagaatacttacacatgcgttggaatttttctttgagctcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgct 240  Q
    ||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  5290078 aagaatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagtaaaaatcaggataagtgct 5290168  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 5302237 - 5302147
Alignment:
Q  150 aagaatacttacacatgcgttggaatttttctttgagctcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgct 240  Q
    ||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  5302237 aagaatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagtaaaaatcaggataagtgct 5302147  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 5309874 - 5309784
Alignment:
Q  150 aagaatacttacacatgcgttggaatttttctttgagctcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgct 240  Q
    ||||||||||||||||||| || ||||| || || || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5309874 aagaatacttacacatgcgctgaaatttctccttaagttcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgct 5309784  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 5284049 - 5283959
Alignment:
Q  150 aagaatacttacacatgcgttggaatttttctttgagctcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgct 240  Q
    ||||||||||||||||||| || ||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  5284049 aagaatacttacacatgcgctgaaatttctctttaagttcagttttgtgttcactgtttgtgattttaaagtaaaaatcaggatacgtgct 5283959  T

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Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 5314691 - 5314601
Alignment:
Q  150 aagaatacttacacatgcgttggaatttttctttgagctcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgct 240  Q
    ||||||||||||||||||| || ||||| |||||||| |||  |||||||||||||||||| |||||||||||||||||||||||||||||    
T  5314691 aagaatacttacacatgcgctgaaatttctctttgagttcaactttgtgttcactatttgtaattttaaagtaaaaatcaggatatgtgct 5314601  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 37863716 - 37863796
Alignment:
Q  157 cttacacatgcgttggaatttttctttgagctcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgt 237  Q
    |||||||||||| |||||||||||| |||| ||||||||||||||||| ||||||||    |||||||| |||||||||||    
T  37863716 cttacacatgcgctggaatttttctctgagttcagttttgtgttcactgtttgtgatacggaagtaaaagtcaggatatgt 37863796  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 37859726 - 37859782
Alignment:
Q  157 cttacacatgcgttggaatttttctttgagctcagttttgtgttcactatttgtgat 213  Q
    |||||||||||| || |||||||||||||||||||| || |||||||| ||||||||    
T  37859726 cttacacatgcgctgaaatttttctttgagctcagtcttatgttcactgtttgtgat 37859782  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 39029691 - 39029635
Alignment:
Q  157 cttacacatgcgttggaatttttctttgagctcagttttgtgttcactatttgtgat 213  Q
    |||||||||||| || ||||||||||| ||||| || ||||| ||||||||||||||    
T  39029691 cttacacatgcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgat 39029635  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 24165431 - 24165523
Alignment:
Q  148 aaaagaatacttacacatgcgttggaatttttctttgagctcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgct 240  Q
    |||| |||||||||| |||||||| |||||||||||||| |   | ||||| || || ||||||| | ||||||| |||||||||||||||||    
T  24165431 aaaataatacttacaaatgcgttgaaatttttctttgagtttgatcttgtgctcgctgtttgtgactctaaagtagaaatcaggatatgtgct 24165523  T

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