View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8047_low_3 (Length: 448)
Name: NF8047_low_3
Description: NF8047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8047_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 56045312 - 56045739
Alignment:
| Q |
1 |
acaacaaattggatcaggttaccatggacttggaattggtgcattcacacttgattgggctggaatttcagcttatcatggaagcccacttgttgcaccg |
100 |
Q |
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| T |
56045312 |
acaacaaattggatcaggttaccatggacttggaattggtgcattcacacttgattgggctggaatttcagcttatcatggaagcccacttgttgcaccg |
56045411 |
T |
|
| Q |
101 |
tggacttccattgttaatgttggggttggatttatcatgttcatctatataattctacccgtatgttactggaggtttaacacttttgatgctaggaagt |
200 |
Q |
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| T |
56045412 |
tggacttccattgttaatgttggggttggatttatcatgttcatctatataattctacccgtatgttactggaggtttaacacttttgatgctaggaagt |
56045511 |
T |
|
| Q |
201 |
ttcctatattctctaatcagttgttcacgtcaagtggacacaagtatgacacgacaaagatcttaaccaaggaatatgatcttaacattgatgcatacaa |
300 |
Q |
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| T |
56045512 |
ttcctatattctctaatcagttgttcacgtcaagtggacacaagtatgacacgacaaagatcttaaccaaggaatatgatcttaacattgatgcatacaa |
56045611 |
T |
|
| Q |
301 |
caagtatggcaagttataccttagtcctctcttcgcattgtctattggatcaggtttcgcaagatttacagcgaccctcactcatgtagcattatttcat |
400 |
Q |
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| T |
56045612 |
caagtatggcaagttataccttagtcctctcttcgcattgtctattggatcaggtttcgcaagatttacagcgaccctcactcatgtagcattatttcat |
56045711 |
T |
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| Q |
401 |
ggcaggtaggctgcttacaaagccttta |
428 |
Q |
| |
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| T |
56045712 |
ggcaggtaggctgcttacaaagccttta |
56045739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 44 - 415
Target Start/End: Original strand, 55706814 - 55707196
Alignment:
| Q |
44 |
ttcacacttgattgggctggaatttcagcttatcatggaagcccacttgttgcaccgtggacttccattgttaatgttggggttggatttatcatgttca |
143 |
Q |
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||||||||||| || ||| | ||||||||||||||||||||||| |||||| |||||||| |||||| |||||||||| |||||||||||||| |||||| |
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| T |
55706814 |
ttcacacttgactgcgcttggatttcagcttatcatggaagccctcttgttacaccgtggtcttccactgttaatgtttgggttggatttatcttgttca |
55706913 |
T |
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| Q |
144 |
tctatataattctacccgt-atgttactggaggtttaaca-cttttgatgctaggaagtttcctatattctctaatcagttgttcacgtcaagtggacac |
241 |
Q |
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|||||||||||||| | | |||||| |||| |||||||| |||||||||||||||||||||||||| | ||||||||||||||||| || |||||||| |
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| T |
55706914 |
tctatataattctatctataatgttagtggaagtttaacaccttttgatgctaggaagtttcctatactttctaatcagttgttcacatccagtggacaa |
55707013 |
T |
|
| Q |
242 |
aagtatgacacgacaaagatcttaaccaaggaatatgatcttaacattga---------tgcatacaacaagtatggcaagttataccttagtcctctct |
332 |
Q |
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||| |||||| || |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| || ||| || |
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| T |
55707014 |
aaggttgacactacgaagatcttaaccaaggaatatgttcttaacattgatgcatgcattgcatacaacaagtatggcaagttatacctcagccctgact |
55707113 |
T |
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| Q |
333 |
tcgcattgtctattggatcaggtttcgcaagatttacagcgaccctcactcatgtagcattatttcatggcaggtaggctgct |
415 |
Q |
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| T |
55707114 |
ttgcattatctattagatcaggtttcacaagatttaaggtaaccctcactcatgtagcactgtttcatggctggtaggctgct |
55707196 |
T |
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