View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8047_low_4 (Length: 428)

Name: NF8047_low_4
Description: NF8047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8047_low_4
NF8047_low_4
[»] chr3 (3 HSPs)
chr3 (1-421)||(8341780-8342200)
chr3 (171-317)||(8333037-8333185)
chr3 (31-229)||(26727406-26727604)
[»] chr1 (6 HSPs)
chr1 (13-421)||(44144710-44145119)
chr1 (20-229)||(44785757-44785966)
chr1 (29-183)||(44611632-44611786)
chr1 (21-229)||(35898916-35899124)
chr1 (39-292)||(11544676-11544933)
chr1 (178-421)||(44612085-44612316)
[»] scaffold0061 (1 HSPs)
scaffold0061 (23-421)||(29669-30067)
[»] scaffold0017 (2 HSPs)
scaffold0017 (23-421)||(168725-169123)
scaffold0017 (22-335)||(173733-174046)
[»] chr2 (2 HSPs)
chr2 (21-277)||(29228546-29228802)
chr2 (21-277)||(29341845-29342101)
[»] chr5 (9 HSPs)
chr5 (192-274)||(29508115-29508197)
chr5 (189-277)||(29507536-29507624)
chr5 (189-274)||(29507611-29507696)
chr5 (189-274)||(29507683-29507768)
chr5 (189-227)||(29507874-29507912)
chr5 (189-227)||(29507946-29507984)
chr5 (189-227)||(29508090-29508128)
chr5 (189-274)||(29507755-29507840)
chr5 (189-274)||(29507971-29508056)


Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 8341780 - 8342200
Alignment:
Q  1 ttgatctacacgattcatattatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactag 100  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  8341780 ttgatctacaccattcacattatttgagtggtgaaatcaatccttcaataactgagttgtaacatctaacatatcttgacctcagttatttgaatactag 8341879  T
Q  101 tggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  8341880 tggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaacggtggttatgagggaaagattcctactcaacttgggaat 8341979  T
Q  201 ctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttcgttattgcaatctctgatgcttg 300  Q
    |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8341980 ctctcacaattgcaacaccttaatctcagtcttaatgatcttgttggtacaatccctttccaactcggaaatctttcgttattgcaatctctgatgcttg 8342079  T
Q  301 gtttcaattctgatcttagaatgaccaaccaaattcaacgaaactctgagtggctatcaagactctcttctttgaaaagacttcacttgagttttgttca 400  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  8342080 gttacaattctgatcttagaatgaccaaccaaattcaacgaaactctgagtggctatcaagtctctcttctttgaaaagacttagcttgagttttgttca 8342179  T
Q  401 aaatctcaatgattcttctca 421  Q
    |||||||||||||||||||||    
T  8342180 aaatctcaatgattcttctca 8342200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 171 - 317
Target Start/End: Original strand, 8333037 - 8333185
Alignment:
Q  171 gaggggaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaa 270  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||    
T  8333037 gagggaaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagacttaatgatcttgttggaaaaatccctttccaactcgaaa 8333136  T
Q  271 atctttcgttattgc--aatctctgatgcttggtttcaattctgatctt 317  Q
    ||||||| || | ||  ||||||| |||||||||| ||| | |||||||    
T  8333137 atctttcattgtagcaaaatctctcatgcttggttacaactttgatctt 8333185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 31 - 229
Target Start/End: Original strand, 26727406 - 26727604
Alignment:
Q  31 gtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaatttattggatcgtt 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||  | ||| ||||| || ||||| |||||||| || ||    
T  26727406 gtgaaatcaatccttcaataactgagttgcaacatctaacatatctagaccttagttcattgatgattagaggtcatatcccaaattttattggctcctt 26727505  T
Q  131 cagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcag 229  Q
    || ||| |||||||||||| ||||||||||||    || | | | |||||||||| |||||||||| || |||||||| |||||||||||| |||||||    
T  26727506 catcaatttacgataccttaatctctcaaatgccttttttaatgagaagattccttctcaacttggaaaactctcacagttgcaacaccttgatctcag 26727604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 178; Significance: 7e-96; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 13 - 421
Target Start/End: Original strand, 44144710 - 44145119
Alignment:
Q  13 attcatattatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattcc 112  Q
    |||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| ||||||||||||||| |||||||||| ||    
T  44144710 attcatatgatttgagtggtgaaatcaatccttcaataactgtgctgcaacatctaacacatctagacctaagttatttgaatactggtggtcaaatccc 44144809  T
Q  113 aaaatttattggatcgttcagcaacttacgatacc-ttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatctctcacaatt 211  Q
    |||||||||||| || |||||||| |||||| ||| |||||||||||  |||||||||||| |||||||||||| ||||||||||||||||||||| |||    
T  44144810 aaaatttattggctccttcagcaagttacgacacctttgatctctcagttggtggttatgatgggaagattcctgctcaacttgggaatctctcacgatt 44144909  T
Q  212 gcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttcgttattgcaatctctgatgcttggtttcaattct 311  Q
    || ||||||| || | || |  ||||| ||  |||||  ||||||||||||||||||||||||||| |||||||| ||||| || ||  ||| |||||||    
T  44144910 gcgacaccttgattttagctacaatgaactcattggagaaatccctttccaactcggaaatctttcattattgcagtctcttatactctgttacaattct 44145009  T
Q  312 gatcttagaatgaccaaccaaattcaacgaaactctgagtggctatcaagactctcttctttgaaaagacttcacttgagttttgttcaaaatctcaatg 411  Q
     |||||||||| | ||||||||||||| ||||   ||||||||| ||||  ||||||| | ||| ||  ||| ||||||||    ||||||||||||| |    
T  44145010 aatcttagaatcaacaaccaaattcaaggaaatgttgagtggctgtcaaatctctcttttctgagaattcttgacttgagtggaattcaaaatctcaagg 44145109  T
Q  412 attcttctca 421  Q
    ||||||||||    
T  44145110 attcttctca 44145119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 44785966 - 44785757
Alignment:
Q  20 ttatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaattt 119  Q
    |||||||||||||| |||||||||||||||||||||| ||| |||||||| |||||||||||||||| |||||| ||||| || ||||||||||||||||    
T  44785966 ttatttgagtggtgtaatcaatccttcaataactgagctgcgacatctaaaatatctagacctcagtcatttgattactaatgatcaaattccaaaattt 44785867  T
Q  120 attggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatctctcacaattgcaacacc 219  Q
    |||||||| ||||||||||||||||||||||| ||||||  ||||||||| |  || ||||||||||||||||||||||||||||||||||||| |||||    
T  44785866 attggatccttcagcaacttacgataccttgacctctcagttggtggttacggtggaaagattcctactcaacttgggaatctctcacaattgcgacacc 44785767  T
Q  220 ttaatctcag 229  Q
    || |||||||    
T  44785766 ttgatctcag 44785757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 44611632 - 44611786
Alignment:
Q  29 tggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaatttattggatcg 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| ||     
T  44611632 tggtgaaatcaatccttcaataactgagttgcaacatctaacatatctaaacctcagttatctgaatactagtggtcaaatcccaaaatttattggctcc 44611731  T
Q  129 ttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattc 183  Q
    ||| |||||||| |||||||||||||||||||| |||||| ||| ||||||||||    
T  44611732 ttctgcaacttaagataccttgatctctcaaatagtggttttgatgggaagattc 44611786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 35898916 - 35899124
Alignment:
Q  21 tatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaattta 120  Q
    |||||||| ||  ||||||| |||| ||||||||| ||||||||||| |||||| |||||||  ||| ||||||||||||||||||||| ||||||||||    
T  35898916 tatttgagaggcaaaatcaaccctttaataactgaattgcaacatcttacatatttagaccttggttttttgaatactagtggtcaaatcccaaaattta 35899015  T
Q  121 ttggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatctctcacaattgcaacacct 220  Q
    |||| || ||||||||||| |||||| |||||||||||||| ||||||  || |||||||||||| |||| ||| |||||||||||   |||||| ||||    
T  35899016 ttggctccttcagcaacttgcgatacattgatctctcaaatagtggtttcgatgggaagattcctgctcagcttaggaatctctcattgttgcaatacct 35899115  T
Q  221 taatctcag 229  Q
    | |||||||    
T  35899116 tgatctcag 35899124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 292
Target Start/End: Complemental strand, 11544933 - 11544676
Alignment:
Q  39 aatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaatttattggatcgttcagcaact 138  Q
    |||||||||||||||||||| |||||||||| |||| |||||||||||  | ||| || |     |||||| |||||||||||||| || || | ||| |    
T  11544933 aatccttcaataactgagttacaacatctaaaatatttagacctcagtagtatgattattttcactcaaatcccaaaatttattggctccttaaccaagt 11544834  T
Q  139 tacgataccttgatctctcaaatggtggttatgaggggaagattc----ctactcaacttgggaatctctcacaattgcaacaccttaatctcagattta 234  Q
    || |||||||| ||||||||||| ||  |||| | | ||||||||    || |||||||||| ||||||||||| |||  ||||||| |||| || |  |    
T  11544833 tatgataccttaatctctcaaatagttattatcatgcgaagattcattccttctcaacttggcaatctctcacagttgagacaccttgatcttagctaca 11544734  T
Q  235 atgatcttgttggaacaatccctttccaactcggaaatctttcgttattgcaatctct 292  Q
    |||| ||  |||||  ||| ||||||||||||||||||||||| || ||||| |||||    
T  11544733 atgaactcattggagaaattcctttccaactcggaaatctttcattgttgcagtctct 11544676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 421
Target Start/End: Original strand, 44612085 - 44612316
Alignment:
Q  178 agattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttc 277  Q
    |||||||| ||||||||||||||||||||||||||| ||||||| |||| ||    ||||| ||   ||||  ||||||||||||||| |||||||||||    
T  44612085 agattccttctcaacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcactggagaaatccctttccaacttggaaatctttc 44612184  T
Q  278 gttattgcaatctctgatgcttggtttcaattctgatcttagaatgaccaaccaaattcaacgaaactctgagtggctatcaagactctcttctttgaaa 377  Q
     || ||||| |||||  | ||  ||| ||||||  || ||||||| | |||||||||            ||||||||||||||  ||||||||| ||| |    
T  44612185 attgttgcagtctcttttactcagttccaattccaatattagaatcaacaaccaaat------------tgagtggctatcaaatctctcttctgtgaga 44612272  T
Q  378 agacttcacttgagttttgttcaaaatctcaatgattcttctca 421  Q
    |  ||| ||||||||  ||||||||||||||| |||||||||||    
T  44612273 attcttgacttgagtgatgttcaaaatctcaacgattcttctca 44612316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 23 - 421
Target Start/End: Complemental strand, 30067 - 29669
Alignment:
Q  23 tttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaatttatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| ||||||||||| ||||||||||||    
T  30067 tttgagtggtgaaatcaatccttcaataactgagttgcaacatctaaaatatcttgacctcagatatttgaataccagtggtcaaatcccaaaatttatt 29968  T
Q  123 ggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatctctcacaattgcaacacctta 222  Q
    |||||  ||||||| |||| ||||||||||||||||  |||||||||||| ||||||||||||| ||||||||||||||| |||||||||| ||| |||     
T  29967 ggatccatcagcaaattacaataccttgatctctcatttggtggttatgatgggaagattcctattcaacttgggaatctatcacaattgcgacatcttg 29868  T
Q  223 atctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttcgttattgcaatctctgatgcttggtttcaattctgatcttagaat 322  Q
    |||| ||    ||||||||   ||||  ||||||||||||||||||||||||||| || ||||  |||||  ||||  ||| ||||||||||||||||||    
T  29867 atcttagcaggaatgatctgaatggagaaatccctttccaactcggaaatctttcattgttgcggtctcttgtgctcagttacaattctgatcttagaat 29768  T
Q  323 gaccaaccaaattcaacgaaactctgagtggctatcaagactctcttctttgaaaagacttcacttgagttttgttcaaaatctcaatgattcttctca 421  Q
     | || ||||| |||| ||||   ||||||||||||||  ||||| ||||||| || | || ||||||||    ||||||||||||| |||||||||||    
T  29767 caacagccaaagtcaaggaaatgttgagtggctatcaaagctctcatctttgagaaaaattgacttgagtacaattcaaaatctcaacgattcttctca 29669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 23 - 421
Target Start/End: Original strand, 168725 - 169123
Alignment:
Q  23 tttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaatttatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| ||||||||||| ||||||||||||    
T  168725 tttgagtggtgaaatcaatccttcaataactgagttgcaacatctaaaatatcttgacctcagatatttgaataccagtggtcaaatcccaaaatttatt 168824  T
Q  123 ggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatctctcacaattgcaacacctta 222  Q
    |||||  ||||||| |||| ||||||||||||||||  |||||||||||| ||||||||||||| ||||||||||||||| |||||||||| ||| |||     
T  168825 ggatccatcagcaaattacaataccttgatctctcatttggtggttatgatgggaagattcctattcaacttgggaatctatcacaattgcgacatcttg 168924  T
Q  223 atctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttcgttattgcaatctctgatgcttggtttcaattctgatcttagaat 322  Q
    |||| ||    ||||||||   ||||  ||||||||||||||||||||||||||| || ||||  |||||  ||||  ||| ||||||||||||||||||    
T  168925 atcttagcaggaatgatctgaatggagaaatccctttccaactcggaaatctttcattgttgcggtctcttgtgctcagttacaattctgatcttagaat 169024  T
Q  323 gaccaaccaaattcaacgaaactctgagtggctatcaagactctcttctttgaaaagacttcacttgagttttgttcaaaatctcaatgattcttctca 421  Q
     | || ||||| |||| ||||   ||||||||||||||  ||||| ||||||| || | || ||||||||    ||||||||||||| |||||||||||    
T  169025 caacagccaaagtcaaggaaatgttgagtggctatcaaagctctcatctttgagaaaaattgacttgagtacaattcaaaatctcaacgattcttctca 169123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 22 - 335
Target Start/End: Original strand, 173733 - 174046
Alignment:
Q  22 atttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaatttat 121  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| |||||||  ||||||||||    
T  173733 atttgagtggtgaaatcaatccttcaataactgagttacaaaatctaacatatttagacctcagttatttgaatactagtagtcaaatctcaaaatttat 173832  T
Q  122 tggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatctctcacaattgcaacacctt 221  Q
    ||| || |||||||| || ||  |||||||||| |||||||||  |||||| |||||| |||||  | ||||||| ||||| |||||||||  | |||||    
T  173833 tggctccttcagcaagttgcggcaccttgatctgtcaaatggtcattatgatgggaaggttccttttgaacttggaaatctatcacaattgtgatacctt 173932  T
Q  222 aatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttcgttattgcaatctctgatgcttggtttcaattctgatcttagaa 321  Q
     |||| || |  ||||| ||  |||||  ||||||||||||||||||||||||||| || ||||| |||||  | ||  ||| ||||||  |||||||||    
T  173933 gatcttagctacaatgaactcattggagaaatccctttccaactcggaaatctttcattgttgcagtctctttttctcagttccaattccaatcttagaa 174032  T
Q  322 tgaccaaccaaatt 335  Q
    | | ||||||||||    
T  174033 tcaacaaccaaatt 174046  T

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Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 21 - 277
Target Start/End: Complemental strand, 29228802 - 29228546
Alignment:
Q  21 tatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaattta 120  Q
    ||||||||||||||||| ||| ||||| |||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  29228802 tatttgagtggtgaaataaattcttcactaactgagctgcaacatctaaaatatctagacctcagttatttgcatactagtggtcaaatcccaaaattta 29228703  T
Q  121 ttggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatctctcacaattgcaacacct 220  Q
    |||| || |||||||| |||| ||||||  |||||||||  |||  |||||| |||||||||||| |||||||||| |||||||||||||||||||||||    
T  29228702 ttggctccttcagcaagttacaatacctcaatctctcaacaggtcattatgatgggaagattccttctcaacttggaaatctctcacaattgcaacacct 29228603  T
Q  221 taatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttc 277  Q
    | |||| ||    ||||| ||  ||||| ||||||||||||||||||||||||||||    
T  29228602 tgatcttagcaacaatgaactcattggagcaatccctttccaactcggaaatctttc 29228546  T

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Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 21 - 277
Target Start/End: Complemental strand, 29342101 - 29341845
Alignment:
Q  21 tatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaattta 120  Q
    ||||||||||||||||| ||| ||||| |||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  29342101 tatttgagtggtgaaataaattcttcactaactgagctgcaacatctaaaatatctagacctcagttatttgcatactagtggtcaaatcccaaaattta 29342002  T
Q  121 ttggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatctctcacaattgcaacacct 220  Q
    |||| || |||||||| |||| ||||||  |||||||||  |||  |||||| |||||||||||| |||||||||| |||||||||||||||||||||||    
T  29342001 ttggctccttcagcaagttacaatacctcaatctctcaacaggtcattatgatgggaagattccttctcaacttggaaatctctcacaattgcaacacct 29341902  T
Q  221 taatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttc 277  Q
    | |||| ||    ||||| ||  ||||| ||||||||||||||||||||||||||||    
T  29341901 tgatcttagcaacaatgaactcattggagcaatccctttccaactcggaaatctttc 29341845  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 29508197 - 29508115
Alignment:
Q  192 cttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatct 274  Q
    ||||| |||||||||||||||||||||||| ||||||||  |||||| ||  ||||| |||| || |||||||| ||||||||    
T  29508197 cttggaaatctctcacaattgcaacaccttgatctcagaggtaatgaactcattggagcaattcccttccaacttggaaatct 29508115  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 277
Target Start/End: Complemental strand, 29507624 - 29507536
Alignment:
Q  189 caacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttc 277  Q
    |||||||| |||||||||||||| ||||||||| ||||||| |  ||||| ||  ||||| |||||||||| ||||||  |||||||||    
T  29507624 caacttggaaatctctcacaattacaacaccttgatctcagctacaatgaactaattggagcaatccctttacaactccaaaatctttc 29507536  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 29507696 - 29507611
Alignment:
Q  189 caacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatct 274  Q
    |||||||| |||||||||||||||||||||||| |||||||    ||||| ||  ||||| |||| || |||||||| ||||||||    
T  29507696 caacttggaaatctctcacaattgcaacaccttgatctcagcgaaaatgaactcattggagcaattcccttccaacttggaaatct 29507611  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 29507768 - 29507683
Alignment:
Q  189 caacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatct 274  Q
    |||||||| |||||||||||||||||||||||| |||||||    ||||| ||  ||||| |||| || |||||||| ||||||||    
T  29507768 caacttggaaatctctcacaattgcaacaccttgatctcagcagaaatgaactcattggagcaattcccttccaacttggaaatct 29507683  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 29507912 - 29507874
Alignment:
Q  189 caacttgggaatctctcacaattgcaacaccttaatctc 227  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  29507912 caacttggaaatctctcacaattgcaacaccttgatctc 29507874  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 29507984 - 29507946
Alignment:
Q  189 caacttgggaatctctcacaattgcaacaccttaatctc 227  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  29507984 caacttggaaatctctcacaattgcaacaccttgatctc 29507946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 29508128 - 29508090
Alignment:
Q  189 caacttgggaatctctcacaattgcaacaccttaatctc 227  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  29508128 caacttggaaatctctcacaattgcaacaccttgatctc 29508090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 29507840 - 29507755
Alignment:
Q  189 caacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatct 274  Q
    |||||||| |||||||||||||||||||| ||| ||||||| |  ||||| ||  |||||  ||| || |||||||| ||||||||    
T  29507840 caacttggaaatctctcacaattgcaacatcttgatctcagctacaatgaactcattggaggaattcccttccaacttggaaatct 29507755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 29508056 - 29507971
Alignment:
Q  189 caacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatct 274  Q
    |||||||| |||||||||||||||||||| ||| ||||||| |  ||||| ||  |||||  ||| || |||||||| ||||||||    
T  29508056 caacttggaaatctctcacaattgcaacatcttgatctcagctacaatgaactcattggaggaattcccttccaacttggaaatct 29507971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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