View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8047_low_6 (Length: 407)
Name: NF8047_low_6
Description: NF8047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8047_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 37248598 - 37248815
Alignment:
| Q |
20 |
atattgcaataaacaccacaagcagctctatagttatccaaaacaaaaccctctacattacactttagttttaaaactcacgagccataagaatcacctt |
119 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37248598 |
atattgcaataaacaccacaagcagctctatagtcatccaaaacaaaaccctctacattacacttcagttttaaaactcacgagccataagaatcacctt |
37248697 |
T |
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| Q |
120 |
atgcatggaaaactgcatgatttctttcaatgcatagcctcat-------------tagcgaatcgaccaatgcatatccgcagacatgtcaattttact |
206 |
Q |
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|||||||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37248698 |
atgcatggaaaactgcatgatttctttcaaatcaaattaacatgacggtgaaatggtagcgaatcgaccaatgcatatccgcagacatgtcaattttact |
37248797 |
T |
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| Q |
207 |
ccttaaatttgaataaat |
224 |
Q |
| |
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|||||||||||||||||| |
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| T |
37248798 |
ccttaaatttgaataaat |
37248815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 28300871 - 28300646
Alignment:
| Q |
16 |
aattatattgcaataaacaccacaagcagctctatagttatccaaaacaaaaccctctacattacactttagttttaaaactcacgagccataagaatca |
115 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28300871 |
aattatattgcaataaacaccacaagcagctatatagt-atccaaaacaaaaccctctacattacactttagttttaaaactcacgagccataagaatca |
28300773 |
T |
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| Q |
116 |
ccttatgcatggaaaactgcatgatttctttcaatgca--tagcctca----------ttagcgaatcgaccaatgcatatccgcagacatgtcaatttt |
203 |
Q |
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|||||||||||||||||||||||||||||||||| || || | | |||||||||||||||| ||||||||||||||||||||||| |
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| T |
28300772 |
ccttatgcatggaaaactgcatgatttctttcaaatcaattaacaagacggtgaaatggtagcgaatcgaccaatatatatccgcagacatgtcaatttt |
28300673 |
T |
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| Q |
204 |
actccttaaatttgaataaatccagtc |
230 |
Q |
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||||||||||||||||||||||||||| |
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| T |
28300672 |
actccttaaatttgaataaatccagtc |
28300646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 254 - 371
Target Start/End: Original strand, 37248843 - 37248960
Alignment:
| Q |
254 |
gaagtcaaactaaatcaagcccttcatagaactagtgatgaaaatcattgaacaatcgatgtcctcatcacacggctctttaacctcccactcgagccat |
353 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| |
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| T |
37248843 |
gaagtcaaactaaatcaagcccttaatagaactagtgatgaaagtcattgaacaatcgacgtcctcatcactcggctctttaaactcccactcgagccat |
37248942 |
T |
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| Q |
354 |
caaaccaaccttatatcc |
371 |
Q |
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|||||||||||||||||| |
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| T |
37248943 |
caaaccaaccttatatcc |
37248960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 254 - 371
Target Start/End: Complemental strand, 28300633 - 28300516
Alignment:
| Q |
254 |
gaagtcaaactaaatcaagcccttcatagaactagtgatgaaaatcattgaacaatcgatgtcctcatcacacggctctttaacctcccactcgagccat |
353 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| |||||| |
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| T |
28300633 |
gaagtcaaactaaatcaagcccttaatagaactagtgatgaaattcattgaacaatcgacatcctcatcactcggctctttaacctcccactctagccat |
28300534 |
T |
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| Q |
354 |
caaaccaaccttatatcc |
371 |
Q |
| |
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|||||||| ||||||||| |
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| T |
28300533 |
caaaccaatcttatatcc |
28300516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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