View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8047_low_8 (Length: 392)
Name: NF8047_low_8
Description: NF8047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8047_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 166 - 286
Target Start/End: Complemental strand, 8064350 - 8064230
Alignment:
| Q |
166 |
tctcttagtggtaatttaatttatttctttggggcttggaccattttcttcataaaaaactgattaaaacaatgatccaatttttgtgtgcgtatgaatg |
265 |
Q |
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| T |
8064350 |
tctcttagtggtaatttaatttatttctttggggcttggaccattttcttcataaaaaactgattaaaacaatgatccaatttttatgtgcgtatgaatg |
8064251 |
T |
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| Q |
266 |
tgaatgacaagtcacttagtc |
286 |
Q |
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| T |
8064250 |
tgaaggacaagtcacttagtc |
8064230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 8064417 - 8064348
Alignment:
| Q |
19 |
caagagttgagttgccctgtgaaagggtaatcagagagatcatttgggttctttttcaattagcaagatct |
89 |
Q |
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| T |
8064417 |
caagagttgagttgccttgtgaaagggtaattaga-agatcatttgggttctttttcaattagcaagatct |
8064348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 278 - 373
Target Start/End: Complemental strand, 8063069 - 8062973
Alignment:
| Q |
278 |
cacttagtcattcacattgacacgtcacctttctttnnnnnnnnn-gtcacttagtcaccttgttttagaggtcccttgtttggagaagcgtagtat |
373 |
Q |
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| T |
8063069 |
cacttagtcattcacattgacacgtcaccttttttttttaaaaaaagtcacttagtcaccttgttttagagatcccttgtttcgagaagcgtagtat |
8062973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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