View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8047_low_9 (Length: 389)

Name: NF8047_low_9
Description: NF8047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8047_low_9
NF8047_low_9
[»] chr2 (3 HSPs)
chr2 (16-375)||(8020629-8020988)
chr2 (22-99)||(22965011-22965088)
chr2 (22-99)||(22399511-22399588)
[»] chr3 (27 HSPs)
chr3 (179-364)||(28151610-28151795)
chr3 (240-364)||(17744491-17744615)
chr3 (240-364)||(19045811-19045935)
chr3 (193-364)||(28037413-28037584)
chr3 (19-99)||(28150946-28151026)
chr3 (194-364)||(11420963-11421133)
chr3 (222-364)||(28149970-28150112)
chr3 (98-186)||(28151276-28151364)
chr3 (239-364)||(27954347-27954471)
chr3 (221-317)||(27458885-27458981)
chr3 (268-364)||(28161925-28162021)
chr3 (239-358)||(8539262-8539381)
chr3 (26-94)||(28003202-28003270)
chr3 (268-364)||(28185968-28186064)
chr3 (239-364)||(27920262-27920389)
chr3 (222-331)||(27776525-27776634)
chr3 (287-364)||(28479860-28479937)
chr3 (287-364)||(28509043-28509120)
chr3 (222-287)||(28056547-28056612)
chr3 (222-287)||(28066972-28067037)
chr3 (17-89)||(26236438-26236510)
chr3 (101-152)||(28054960-28055011)
chr3 (101-152)||(28065385-28065436)
chr3 (16-49)||(27979505-27979538)
chr3 (100-152)||(8539704-8539756)
chr3 (104-152)||(28149203-28149251)
chr3 (158-186)||(28161470-28161498)
[»] scaffold0257 (2 HSPs)
scaffold0257 (221-361)||(19079-19219)
scaffold0257 (106-152)||(18626-18672)
[»] scaffold0922 (1 HSPs)
scaffold0922 (298-364)||(1819-1885)
[»] chr4 (2 HSPs)
chr4 (158-186)||(9328792-9328820)
chr4 (158-186)||(9382569-9382597)


Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 16 - 375
Target Start/End: Original strand, 8020629 - 8020988
Alignment:
Q  16 caacaatattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatttcttgtattctttttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020629 caacaatattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatttcttgtattctttttt 8020728  T
Q  116 acactttgtcaataccggaattgaattataccacaatattgacaggttagcgaaataagtgttgaagaaggtgacaaccaaagagcaatagcttctactt 215  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8020729 acactttgtcagtaccggaattgaattataccacaatattgacaggttagcgaaataagtgttgaagaaggtgacaaccaaagagctatagcttctactt 8020828  T
Q  216 caatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttgga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020829 caatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttgga 8020928  T
Q  316 tcggttttcttttcttaagttacctcatcgcccttttcattttgaagttaaccttcttct 375  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8020929 tcggttttcttttcttaagttatctcatcgcccttttcattttgaagttaaccttcttct 8020988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 22965011 - 22965088
Alignment:
Q  22 tattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatt 99  Q
    ||||||||||||||||| ||||||| |||||||| ||| ||| |||||| ||||||||||||||||||||||| ||||    
T  22965011 tattaccaacaaattcagaagtaatatgaaggccgtgtcaaattcacttcgatattcctctccaaatatatacttatt 22965088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 22399511 - 22399588
Alignment:
Q  22 tattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatt 99  Q
    ||||||||||||||||| ||||||| |||||||| ||| ||| ||||||  |||||||||||||||||||||| ||||    
T  22399511 tattaccaacaaattcagaagtaatatgaaggccgtgtcaaattcacttctatattcctctccaaatatatacttatt 22399588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 8e-77; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 179 - 364
Target Start/End: Original strand, 28151610 - 28151795
Alignment:
Q  179 gaagaaggtgacaaccaaagagcaatagcttctacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaacta 278  Q
    ||||||||||||||||||||||||||||||| |||| |||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28151610 gaagaaggtgacaaccaaagagcaatagcttatactccaattgacataacaaagcctgtaaccactcaagatgttgatgttgaaatctggcaggaaacta 28151709  T
Q  279 gtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 364  Q
    ||||||||||||| |||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||    
T  28151710 gtaacactaatgatgatcaaggtgaagaatctttggatcgcttttattttcttaagttacctcatcgccctttttattttgaagtt 28151795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 240 - 364
Target Start/End: Complemental strand, 17744615 - 17744491
Alignment:
Q  240 ccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacc 339  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| || | |||| || ||||||||||||| |||| |||||||||||||||    
T  17744615 ccactcaagatgttgatgttgaaatctggcaggaaactagaaagactaatgatgaccaaggtaaaaaatctttggatcgattttattttcttaagttacc 17744516  T
Q  340 tcatcgcccttttcattttgaagtt 364  Q
    ||||||| |||||||||||||||||    
T  17744515 tcatcgctcttttcattttgaagtt 17744491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 240 - 364
Target Start/End: Complemental strand, 19045935 - 19045811
Alignment:
Q  240 ccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacc 339  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| || | |||| || ||||||||||||| |||| |||||||||||||||    
T  19045935 ccactcaagatgttgatgttgaaatctggcaggaaactagaaagactaatgatgaccaaggtaaaaaatctttggatcgattttattttcttaagttacc 19045836  T
Q  340 tcatcgcccttttcattttgaagtt 364  Q
    ||||||| |||||||||||||||||    
T  19045835 tcatcgctcttttcattttgaagtt 19045811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 193 - 364
Target Start/End: Original strand, 28037413 - 28037584
Alignment:
Q  193 ccaaagagcaatagcttctacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgac 292  Q
    ||||||||| ||||||||| |||||||  |||||||||||||| | |||||| ||||||||||| |  ||| |||||  ||||||||||||||||||||     
T  28037413 ccaaagagccatagcttctccttcaattaccataacaaagcctgttaccactgaagatgttgatctcaaaaactggcgcgaaactagtaacactaatgat 28037512  T
Q  293 gatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 364  Q
    | || |||| |||| |||||||||| || || |||||| ||||||||||||| |||||||||||||||||||    
T  28037513 ggtcaaggtaaagactctttggatcagtgttattttctaaagttacctcatcacccttttcattttgaagtt 28037584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 28150946 - 28151026
Alignment:
Q  19 caatattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatt 99  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28150946 caataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatt 28151026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 194 - 364
Target Start/End: Original strand, 11420963 - 11421133
Alignment:
Q  194 caaagagcaatagcttctacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacg 293  Q
    |||| ||| ||||||||| ||  ||| |||||||||||||||   |||| |||||||||||||||| ||||||| ||||||||||||||  ||||||| |    
T  11420963 caaatagccatagcttctcctcaaattgccataacaaagcctgctaccattcaagatgttgatgttaaaatctgtcaggaaactagtaaggctaatgatg 11421062  T
Q  294 atcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 364  Q
    ||| |||||| || |||||||||| ||||| ||||||||||||||  |||| |||||||||||| ||||||    
T  11421063 atcaaggtgatgactctttggatcagttttattttcttaagttacgacatcacccttttcatttagaagtt 11421133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 222 - 364
Target Start/End: Original strand, 28149970 - 28150112
Alignment:
Q  222 ccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggtt 321  Q
    ||||||||| |||||| ||||||||||| ||| ||||| | | || |||||||||||||||||||||||| |||| ||||||||| |||| |||||  ||    
T  28149970 ccataacaaggcctcttaccactcaagaagttcatgttaataacttgcaggaaactagtaacactaatgatgatcaaggtgaagagtcttaggatcaatt 28150069  T
Q  322 ttcttttcttaagttacctcatcgcccttttcattttgaagtt 364  Q
    || ||||||||||||| |||||| |||||||||||||||||||    
T  28150070 ttattttcttaagttatctcatcacccttttcattttgaagtt 28150112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 28151276 - 28151364
Alignment:
Q  98 tttcttgtattcttttttacactttgtcaataccggaattgaattataccacaatattgacaggttagcgaaataagtgttgaagaagg 186  Q
    ||||||||||||||||| ||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28151276 tttcttgtattctttttcacactttgtcagtacagaaattgaattatactacaatattgacaggttagcgaaataagtgttgaagaagg 28151364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 239 - 364
Target Start/End: Original strand, 27954347 - 27954471
Alignment:
Q  239 accactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttac 338  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||| ||||||| | |||||||||  || || ||||| ||||||||    
T  27954347 accactcaatatgttgatgataaaatctggcaggaaactagtaacactaatgatgatcaaggtgaaaactctttggattagtgttgttttcataagttac 27954446  T
Q  339 ctcatcgcccttttcattttgaagtt 364  Q
    ||||||  ||||||||||||||||||    
T  27954447 ctcatc-accttttcattttgaagtt 27954471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 221 - 317
Target Start/End: Complemental strand, 27458981 - 27458885
Alignment:
Q  221 gccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatc 317  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || ||||| || |||| ||||||||| ||||||||||    
T  27458981 gccataacaaagcctcttaccactcaagatgttgatgttaaaatctggcaggaaactagcaagactaaggatgatcaaggtgaagactctttggatc 27458885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 268 - 364
Target Start/End: Original strand, 28161925 - 28162021
Alignment:
Q  268 gcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 364  Q
    |||||||||||||||||||||||| |||| ||||||||| ||||||||||  |||| ||||||||||||| |||||| |||||||||||||||||||    
T  28161925 gcaggaaactagtaacactaatgatgatcaaggtgaagactctttggatcaattttattttcttaagttatctcatcacccttttcattttgaagtt 28162021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 239 - 358
Target Start/End: Complemental strand, 8539381 - 8539262
Alignment:
Q  239 accactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttac 338  Q
    ||||||||||||||||||||| || | ||||||||||||||||||||||||    ||| |||||||||||| ||||||| ||||| ||||||||||||||    
T  8539381 accactcaagatgttgatgttaaactttggcaggaaactagtaacactaatattaatcaaggtgaagaatccttggatcagttttattttcttaagttac 8539282  T
Q  339 ctcatcgcccttttcatttt 358  Q
    ||  || |||||||||||||    
T  8539281 cttgtcacccttttcatttt 8539262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 28003202 - 28003270
Alignment:
Q  26 accaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatac 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  28003202 accaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggataatcctctcccaatatatac 28003270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 268 - 364
Target Start/End: Original strand, 28185968 - 28186064
Alignment:
Q  268 gcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 364  Q
    ||||||||||||||||||| |||| |||| ||||||||| ||||||||||  |||| ||||||||||||| |||||| |||||||||||||||||||    
T  28185968 gcaggaaactagtaacactgatgatgatcaaggtgaagactctttggatcaattttattttcttaagttatctcatcacccttttcattttgaagtt 28186064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 239 - 364
Target Start/End: Original strand, 27920262 - 27920389
Alignment:
Q  239 accactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaag---t 335  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||| ||||||| | |||||||||  || || ||||| ||||   |    
T  27920262 accactcaatatgttgatgataaaatctggcaggaaactagtaacactaatgatgatcaaggtgaaaactctttggattagtgttgttttcataagcaat 27920361  T
Q  336 tacctcatcgcccttttcattttgaagtt 364  Q
    |||||||||  ||||||||||||||||||    
T  27920362 tacctcatc-accttttcattttgaagtt 27920389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 222 - 331
Target Start/End: Original strand, 27776525 - 27776634
Alignment:
Q  222 ccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggtt 321  Q
    |||||||||||||||  || |||||||||||||||||||||| || ||||||||||||||| ||||||||  ||| ||||||| | ||||||||||  ||    
T  27776525 ccataacaaagcctcctactactcaagatgttgatgttgaaaacttgcaggaaactagtaagactaatgatcatcaaggtgaaaactctttggatcaatt 27776624  T
Q  322 ttcttttctt 331  Q
    || |||||||    
T  27776625 ttattttctt 27776634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 287 - 364
Target Start/End: Complemental strand, 28479937 - 28479860
Alignment:
Q  287 aatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 364  Q
    ||||| |||| ||||||||| ||||||||||  |||| ||||||||| |||||||||| |||||| ||||||||||||    
T  28479937 aatgatgatcaaggtgaagactctttggatcaattttattttcttaatttacctcatcaccctttgcattttgaagtt 28479860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 287 - 364
Target Start/End: Complemental strand, 28509120 - 28509043
Alignment:
Q  287 aatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 364  Q
    ||||| |||| ||||||||| ||||||||||  |||| ||||||||| |||||||||| |||||| ||||||||||||    
T  28509120 aatgatgatcaaggtgaagactctttggatcaattttattttcttaatttacctcatcaccctttgcattttgaagtt 28509043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 28056547 - 28056612
Alignment:
Q  222 ccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacacta 287  Q
    ||||||||| |||||| ||||||||||| ||| ||||| | | || ||||||||||||||||||||    
T  28056547 ccataacaaggcctcttaccactcaagaagttcatgttaataacttgcaggaaactagtaacacta 28056612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 28066972 - 28067037
Alignment:
Q  222 ccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacacta 287  Q
    ||||||||| |||||| ||||||||||| ||| ||||| | | || ||||||||||||||||||||    
T  28066972 ccataacaaggcctcttaccactcaagaagttcatgttaataacttgcaggaaactagtaacacta 28067037  T

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Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 26236510 - 26236438
Alignment:
Q  17 aacaatattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaata 89  Q
    |||| ||||||||||||||| | |||||||||| || |||||| ||| || | |||| |||||||||||||||    
T  26236510 aacattattaccaacaaattaagaagtaatttgtagaccatgtaaaattcccatggaaattcctctccaaata 26236438  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 28054960 - 28055011
Alignment:
Q  101 cttgtattcttttttacactttgtcaataccggaattgaattataccacaat 152  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||    
T  28054960 cttgtattttttttaacactttgtcaatgcaggaattgaattatactacaat 28055011  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 28065385 - 28065436
Alignment:
Q  101 cttgtattcttttttacactttgtcaataccggaattgaattataccacaat 152  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||    
T  28065385 cttgtattttttttaacactttgtcaatgcaggaattgaattatactacaat 28065436  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 27979505 - 27979538
Alignment:
Q  16 caacaatattaccaacaaattcaaaagtaatttg 49  Q
    |||||||||||||||||||||| |||||||||||    
T  27979505 caacaatattaccaacaaattcgaaagtaatttg 27979538  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 8539756 - 8539704
Alignment:
Q  100 tcttgtattcttttttacactttgtcaataccggaattgaattataccacaat 152  Q
    ||||||||||||||| |||||||  |||| | ||||||||||||||| |||||    
T  8539756 tcttgtattctttttaacacttttccaatgcaggaattgaattatactacaat 8539704  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 28149203 - 28149251
Alignment:
Q  104 gtattcttttttacactttgtcaataccggaattgaattataccacaat 152  Q
    ||||||||||  ||||||||||||| | ||||||||||||||| |||||    
T  28149203 gtattcttttgaacactttgtcaatgcaggaattgaattatactacaat 28149251  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 186
Target Start/End: Original strand, 28161470 - 28161498
Alignment:
Q  158 caggttagcgaaataagtgttgaagaagg 186  Q
    |||||||||||||||||||||||||||||    
T  28161470 caggttagcgaaataagtgttgaagaagg 28161498  T

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Target: scaffold0257 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 221 - 361
Target Start/End: Original strand, 19079 - 19219
Alignment:
Q  221 gccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggt 320  Q
    ||||||||||||||||| ||||||||||||||||||||| | | || ||||||||||||||||| || ||| |||| ||||||||| ||||||||||  |    
T  19079 gccataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaat 19178  T
Q  321 tttcttttcttaagttacctcatcgcccttttcattttgaa 361  Q
     || |||||||||||||||||||| ||||||||||||||||    
T  19179 attattttcttaagttacctcatcacccttttcattttgaa 19219  T

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Target: scaffold0257; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 18626 - 18672
Alignment:
Q  106 attcttttttacactttgtcaataccggaattgaattataccacaat 152  Q
    ||||||||| ||||||||||||| | ||||||||||||||| |||||    
T  18626 attctttttgacactttgtcaatgcaggaattgaattatactacaat 18672  T

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Target: scaffold0922 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 364
Target Start/End: Original strand, 1819 - 1885
Alignment:
Q  298 aggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 364  Q
    ||||||||| | |||  ||||||||| ||||||||||||||| |||| |||||||||||||||||||    
T  1819 aggtgaagagtatttcaatcggttttattttcttaagttaccacatcacccttttcattttgaagtt 1885  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 186
Target Start/End: Complemental strand, 9328820 - 9328792
Alignment:
Q  158 caggttagcgaaataagtgttgaagaagg 186  Q
    |||||||||||||||||||||||||||||    
T  9328820 caggttagcgaaataagtgttgaagaagg 9328792  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 186
Target Start/End: Complemental strand, 9382597 - 9382569
Alignment:
Q  158 caggttagcgaaataagtgttgaagaagg 186  Q
    |||||||||||||||||||||||||||||    
T  9382597 caggttagcgaaataagtgttgaagaagg 9382569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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