View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8048_high_1 (Length: 864)

Name: NF8048_high_1
Description: NF8048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8048_high_1
NF8048_high_1
[»] chr3 (5 HSPs)
chr3 (288-846)||(44478993-44479552)
chr3 (118-243)||(44479600-44479725)
chr3 (44-114)||(44479801-44479869)
chr3 (113-171)||(44479711-44479769)
chr3 (111-156)||(44479648-44479693)
[»] chr5 (5 HSPs)
chr5 (288-846)||(21974626-21975185)
chr5 (118-243)||(21974453-21974578)
chr5 (44-114)||(21974309-21974377)
chr5 (113-171)||(21974409-21974467)
chr5 (111-156)||(21974485-21974530)
[»] scaffold0018 (4 HSPs)
scaffold0018 (288-663)||(75651-76026)
scaffold0018 (387-663)||(76028-76304)
scaffold0018 (387-663)||(76306-76582)
scaffold0018 (35-243)||(75384-75603)
[»] chr8 (2 HSPs)
chr8 (490-633)||(41770387-41770530)
chr8 (704-750)||(41770601-41770647)
[»] chr4 (2 HSPs)
chr4 (490-633)||(35599648-35599791)
chr4 (704-750)||(35599531-35599577)
[»] chr7 (5 HSPs)
chr7 (490-633)||(47736192-47736335)
chr7 (491-625)||(37876506-37876640)
chr7 (770-834)||(47735991-47736055)
chr7 (521-612)||(34796502-34796593)
chr7 (704-750)||(47736075-47736121)
[»] chr2 (2 HSPs)
chr2 (490-633)||(13648859-13649002)
chr2 (704-750)||(13649073-13649119)
[»] chr1 (2 HSPs)
chr1 (28-114)||(32620165-32620249)
chr1 (521-612)||(51017102-51017193)
[»] chr6 (1 HSPs)
chr6 (491-612)||(22369914-22370035)


Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 288 - 846
Target Start/End: Complemental strand, 44479552 - 44478993
Alignment:
Q  288 caaattttaaagtaatatagttacaaataaactgacaagaaatat-gatcaatattttgacagcagtaaaatacctttcttttttgtgcttcagggttca 386  Q
    |||||| ||||  |||||||||| | ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  44479552 caaattataaatcaatatagttagagataaactgacaagaaatattgatcaatattttgacagaagtaaaatacctttcttttttgtgcttctgggttca 44479453  T
Q  387 ctgtctgacatttacaacctcttgcattgtgaccacaacttccacattttgtgcacttgtacttactagcacctctgctaaatttcccacatgtttttgc 486  Q
     |||||||| ||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44479452 ttgtctgacttttgcaacctctagcattgtgaccacaactcccacatcttgtgcacttgtacttactagcacctctgctaaatttcccacatgattttgc 44479353  T
Q  487 tggctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacata 586  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  44479352 tggctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttgatgtacacaggaggaagcatctcctcacattcaacttcaggccacata 44479253  T
Q  587 tcttgaccatttatggcactcacattaaagttataacatgcttcatacttgctcctagtataccattcagaaacatagccctctgggttttgatccatct 686  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||    
T  44479252 tcttgaccatttatagcactcacattgaagttataacatgcttcatacttgctcctagtataccattcagaaacatagccctctgggttttggtctgtct 44479153  T
Q  687 tagacattgcaacaatagcatgtctgcaaggtatacctacaagctcccaaaaattacaactacaagnnnnnnncctcatgtccacagtaaatctctgccc 786  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       || ||||||||||||||||||||||||    
T  44479152 tagacattgcaacaatagcatgtctgcaaggtatacctactagctcccaaaaattacaactacaagttcttttccccatgtccacagtaaatctctgccc 44479053  T
Q  787 accaccaatcatttcaacctcaaactcctcatcatttccccaagttgcaatccaattacc 846  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44479052 accaccaatcatttcaacctcaaactcctcaccatttccccaagttgcaatccaattacc 44478993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 118 - 243
Target Start/End: Complemental strand, 44479725 - 44479600
Alignment:
Q  118 tttgaactggattagtcccctcactttgacttgcttgagtttgaactggattggtctcctcaatttcacttgcttgagcactttgggtttcatgttgagc 217  Q
    ||||||||||||| | |||  ||||||||||| ||| |||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||||||    
T  44479725 tttgaactggattggcccctccactttgacttacttcagtttgaactggattggtctccccactttgacttgcttgagcactttgtgtttcatgttgagc 44479626  T
Q  218 agactgttcttgagagacttgagcac 243  Q
    ||||||||||||||||||||||||||    
T  44479625 agactgttcttgagagacttgagcac 44479600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 44479869 - 44479801
Alignment:
Q  44 agtagcatataatgaacaaattagtagagcatctaataaacaatttaccttcctttgaactttaccaactt 114  Q
    ||||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||||| ||||||    
T  44479869 agtagcatataataaacaaattagtag--catataataaacaatttaccttcctttgaactttatcaactt 44479801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 44479769 - 44479711
Alignment:
Q  113 ttgagtttgaactggattagtcccctcactttgacttgcttgagtttgaactggattgg 171  Q
    |||||| |||| |||||| | |||| ||||||||||||||| | |||||||||||||||    
T  44479769 ttgagtctgaattggattggcccccccactttgacttgcttcaatttgaactggattgg 44479711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 44479693 - 44479648
Alignment:
Q  111 acttgagtttgaactggattagtcccctcactttgacttgcttgag 156  Q
    |||| ||||||||||||||| ||| || ||||||||||||||||||    
T  44479693 acttcagtttgaactggattggtctccccactttgacttgcttgag 44479648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 288 - 846
Target Start/End: Original strand, 21974626 - 21975185
Alignment:
Q  288 caaattttaaagtaatatagttacaaataaactgacaagaaatat-gatcaatattttgacagcagtaaaatacctttcttttttgtgcttcagggttca 386  Q
    |||||| ||||  |||||||||| | ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  21974626 caaattataaatcaatatagttagagataaactgacaagaaatattgatcaatattttgacagaagtaaaatacctttcttttttgtgcttctgggttca 21974725  T
Q  387 ctgtctgacatttacaacctcttgcattgtgaccacaacttccacattttgtgcacttgtacttactagcacctctgctaaatttcccacatgtttttgc 486  Q
     |||||||| ||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21974726 ttgtctgacttttgcaacctctagcattgtgaccacaactcccacatcttgtgcacttgtacttactagcacctctgctaaatttcccacatgattttgc 21974825  T
Q  487 tggctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacata 586  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  21974826 tggctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttgatgtacacaggaggaagcatctcctcacattcaacttcaggccacata 21974925  T
Q  587 tcttgaccatttatggcactcacattaaagttataacatgcttcatacttgctcctagtataccattcagaaacatagccctctgggttttgatccatct 686  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||    
T  21974926 tcttgaccatttatagcactcacattgaagttataacatgcttcatacttgctcctagtataccattcagaaacatagccctctgggttttggtctgtct 21975025  T
Q  687 tagacattgcaacaatagcatgtctgcaaggtatacctacaagctcccaaaaattacaactacaagnnnnnnncctcatgtccacagtaaatctctgccc 786  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       || ||||| ||||||||||||||||||    
T  21975026 tagacattgcaacaatagcatgtctgcaaggtatacctactagctcccaaaaattacaactacaagttcttttccccatgttcacagtaaatctctgccc 21975125  T
Q  787 accaccaatcatttcaacctcaaactcctcatcatttccccaagttgcaatccaattacc 846  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21975126 accaccaatcatttcaacctcaaactcctcaccatttccccaagttgcaatccaattacc 21975185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 118 - 243
Target Start/End: Original strand, 21974453 - 21974578
Alignment:
Q  118 tttgaactggattagtcccctcactttgacttgcttgagtttgaactggattggtctcctcaatttcacttgcttgagcactttgggtttcatgttgagc 217  Q
    ||||||||||||| | |||  ||||||||||| ||| |||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||||||    
T  21974453 tttgaactggattggcccctccactttgacttacttcagtttgaactggattggtctccccactttgacttgcttgagcactttgtgtttcatgttgagc 21974552  T
Q  218 agactgttcttgagagacttgagcac 243  Q
    ||||||||||||||||||||||||||    
T  21974553 agactgttcttgagagacttgagcac 21974578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 21974309 - 21974377
Alignment:
Q  44 agtagcatataatgaacaaattagtagagcatctaataaacaatttaccttcctttgaactttaccaactt 114  Q
    ||||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||||| ||||||    
T  21974309 agtagcatataataaacaaattagtag--catataataaacaatttaccttcctttgaactttatcaactt 21974377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 21974409 - 21974467
Alignment:
Q  113 ttgagtttgaactggattagtcccctcactttgacttgcttgagtttgaactggattgg 171  Q
    |||||| |||| |||||| | |||| ||||||||||||||| | |||||||||||||||    
T  21974409 ttgagtctgaattggattggcccccccactttgacttgcttcaatttgaactggattgg 21974467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 21974485 - 21974530
Alignment:
Q  111 acttgagtttgaactggattagtcccctcactttgacttgcttgag 156  Q
    |||| ||||||||||||||| ||| || ||||||||||||||||||    
T  21974485 acttcagtttgaactggattggtctccccactttgacttgcttgag 21974530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 312; Significance: 1e-175; HSPs: 4)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 288 - 663
Target Start/End: Original strand, 75651 - 76026
Alignment:
Q  288 caaattttaaagtaatatagttacaaataaactgacaagaaatatgatcaatattttgacagcagtaaaatacctttcttttttgtgcttcagggttcac 387  Q
    |||||| ||||  |||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  75651 caaattataaatcaatatagttagagataaactgacaagaaatatgatcaatattttgacagaagtaaaatacctttctcttttgtgcttcagggttcac 75750  T
Q  388 tgtctgacatttacaacctcttgcattgtgaccacaacttccacattttgtgcacttgtacttactagcacctctgctaaatttcccacatgtttttgct 487  Q
    |||||||| ||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  75751 tgtctgacttttgcaacctctggcattgtgaccacaactcccacatgttgtgcacttgtacttactagcacctctgctaaatttcccacatgattttgct 75850  T
Q  488 ggctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacatat 587  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  75851 ggctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacaaaggaggaagcatctcctcacatttaacttcaggccacatat 75950  T
Q  588 cttgaccatttatggcactcacattaaagttataacatgcttcatacttgctcctagtataccattcagaaacata 663  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75951 cttgaccatttatagcactcacattaaagttataacatgcttcatacttgctcctagtataccattcagaaacata 76026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 387 - 663
Target Start/End: Original strand, 76028 - 76304
Alignment:
Q  387 ctgtctgacatttacaacctcttgcattgtgaccacaacttccacattttgtgcacttgtacttactagcacctctgctaaatttcccacatgtttttgc 486  Q
    ||||||||| ||| ||||||||  ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  76028 ctgtctgacttttgcaacctctgccattgtgaccacagctcccacatgttgtgcacttgtacttactagcacctctgctaaatttcccacatgattttgc 76127  T
Q  487 tggctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacata 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  76128 tggctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacaaaggaggaagcatctcctcacatttaacttcaggccacata 76227  T
Q  587 tcttgaccatttatggcactcacattaaagttataacatgcttcatacttgctcctagtataccattcagaaacata 663  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  76228 tcttgaccatttatagcactcacattaaagttataacatgcttcatacttgctcctagtataccattcagaaacata 76304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 387 - 663
Target Start/End: Original strand, 76306 - 76582
Alignment:
Q  387 ctgtctgacatttacaacctcttgcattgtgaccacaacttccacattttgtgcacttgtacttactagcacctctgctaaatttcccacatgtttttgc 486  Q
    ||||||||| ||| ||||||||  ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  76306 ctgtctgacttttgcaacctctgccattgtgaccacagctcccacatgttgtgcacttgtacttactagcacctctgctaaatttcccacatgattttgc 76405  T
Q  487 tggctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacata 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  76406 tggctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacaaaggaggaagcatctcctcacatttaacttcaggccacata 76505  T
Q  587 tcttgaccatttatggcactcacattaaagttataacatgcttcatacttgctcctagtataccattcagaaacata 663  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  76506 tcttgaccatttatagcactcacattaaagttataacatgcttcatacttgctcctagtataccattcagaaacata 76582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #4
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 35 - 243
Target Start/End: Original strand, 75384 - 75603
Alignment:
Q  35 aagcaatttagt-agcatataatgaacaaattagtagagcatctaataaacaatttaccttcctttga-----------acttt-accaacttgagtttg 121  Q
    |||||||||||| |||||||||| |||||||||||||  ||| |||||||||||||||||||||||||           ||||| ||    |||||| ||    
T  75384 aagcaatttagttagcatataataaacaaattagtag--catataataaacaatttaccttcctttgattagttcctccactttgacttgtttgagtctg 75481  T
Q  122 aactggattagtcccctcactttgacttgcttgagtttgaactggattggtctcctcaatttcacttgcttgagcactttgggtttcatgttgagcagac 221  Q
    |||||||||   |||| ||||||||||||||| |||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||||||||||    
T  75482 aactggattgacccccccactttgacttgcttcagtttgaactggattggtctccccactttgacttgcttgagcactttgtgtttcatgttgagcagac 75581  T
Q  222 tgttcttgagagacttgagcac 243  Q
    ||||||||||||||||||||||    
T  75582 tgttcttgagagacttgagcac 75603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 490 - 633
Target Start/End: Original strand, 41770387 - 41770530
Alignment:
Q  490 ctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacatatct 589  Q
    |||| ||||||| |||||||| || ||||| ||||| || || ||||| || || |  || |||||||||||||||||||| || |||||||||||||||    
T  41770387 ctcaccaggctccctcctcctcagcttctttggtctcccaggcccttttttataaattggtggaagcatctcctcacattccacctcaggccacatatct 41770486  T
Q  590 tgaccatttatggcactcacattaaagttataacatgcttcata 633  Q
    || ||||| |||||||||||||||  ||| ||||||||||||||    
T  41770487 tgcccattaatggcactcacattatggttgtaacatgcttcata 41770530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 704 - 750
Target Start/End: Original strand, 41770601 - 41770647
Alignment:
Q  704 gcatgtctgcaaggtatacctacaagctcccaaaaattacaactaca 750  Q
    ||||| || |||||||||||||| | |||||||||||||||||||||    
T  41770601 gcatgcctacaaggtatacctaccaactcccaaaaattacaactaca 41770647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 490 - 633
Target Start/End: Complemental strand, 35599791 - 35599648
Alignment:
Q  490 ctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacatatct 589  Q
    |||| ||||||| |||||||| || ||||| ||||| || || ||||| || || |  || |||||||||||||||||||| || |||||||||||||||    
T  35599791 ctcaccaggctccctcctcctcagcttctttggtctcccaggcccttttttataaattggtggaagcatctcctcacattccacctcaggccacatatct 35599692  T
Q  590 tgaccatttatggcactcacattaaagttataacatgcttcata 633  Q
    || ||||| |||||||||||||||  ||| ||||||||||||||    
T  35599691 tgcccattaatggcactcacattatggttgtaacatgcttcata 35599648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 704 - 750
Target Start/End: Complemental strand, 35599577 - 35599531
Alignment:
Q  704 gcatgtctgcaaggtatacctacaagctcccaaaaattacaactaca 750  Q
    ||||| || |||||||||||||| | |||||||||||||||||||||    
T  35599577 gcatgcctacaaggtatacctaccaactcccaaaaattacaactaca 35599531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 490 - 633
Target Start/End: Complemental strand, 47736335 - 47736192
Alignment:
Q  490 ctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacatatct 589  Q
    |||| ||||||| |||||||| || ||||| ||||| || || ||||| || ||    || |||||||||||||||||||| || |||||||||||||||    
T  47736335 ctcaccaggctccctcctcctaagcttctttggtctcccaggcccttttttataagttggtggaagcatctcctcacattccacctcaggccacatatct 47736236  T
Q  590 tgaccatttatggcactcacattaaagttataacatgcttcata 633  Q
    || ||||| |||||||||||||||  ||| | ||||||||||||    
T  47736235 tgtccattaatggcactcacattatggttgttacatgcttcata 47736192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 625
Target Start/End: Complemental strand, 37876640 - 37876506
Alignment:
Q  491 tcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacatatctt 590  Q
    |||||||| || ||||| ||||| ||||| ||||||||||| |||||||||||    ||||||||||| || ||   |||||| |  |||||||| ||||    
T  37876640 tcatcaggttccctccttcttagcttctttggtcttcctggacctttcttgtaggttggaggaagcatatcttccacttcaacatttggccacatgtctt 37876541  T
Q  591 gaccatttatggcactcacattaaagttataacat 625  Q
    | ||||| || ||||| ||||||||| ||||||||    
T  37876540 gtccattgattgcactaacattaaagctataacat 37876506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 770 - 834
Target Start/End: Complemental strand, 47736055 - 47735991
Alignment:
Q  770 acagtaaatctctgcccaccaccaatcatttcaacctcaaactcctcatcatttccccaagttgc 834  Q
    ||||||||||| || |||||||| | |||||||||||||||||| ||| |  |||||||||||||    
T  47736055 acagtaaatctatgtccaccacccaccatttcaacctcaaactcatcacctattccccaagttgc 47735991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 612
Target Start/End: Original strand, 34796502 - 34796593
Alignment:
Q  521 ggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacatatcttgaccatttatggcactcacatt 612  Q
    ||||||||||| || || || ||  ||||||| | || ||||||||||||||| || |||||||| ||||||||||| || ||||| |||||    
T  34796502 ggtcttcctggaccctttttataagcaggaggtaacaactcctcacattcaacctctggccacatgtcttgaccattgatagcacttacatt 34796593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 704 - 750
Target Start/End: Complemental strand, 47736121 - 47736075
Alignment:
Q  704 gcatgtctgcaaggtatacctacaagctcccaaaaattacaactaca 750  Q
    ||||| || |||||||||||||| | |||||||||||||||||||||    
T  47736121 gcatgcctacaaggtatacctaccaactcccaaaaattacaactaca 47736075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 490 - 633
Target Start/End: Original strand, 13648859 - 13649002
Alignment:
Q  490 ctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacatatct 589  Q
    |||| ||||||| |||||||| || ||||| ||||| || || ||||| || ||    || |||||||||||||||||||| || |||||||||||||||    
T  13648859 ctcaccaggctccctcctcctaagcttctttggtctcccaggcccttttttataagttggtggaagcatctcctcacattccacctcaggccacatatct 13648958  T
Q  590 tgaccatttatggcactcacattaaagttataacatgcttcata 633  Q
    || ||||| |||||||||||||||  ||| | ||||||||||||    
T  13648959 tgtccattaatggcactcacattatggttgttacatgcttcata 13649002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 704 - 750
Target Start/End: Original strand, 13649073 - 13649119
Alignment:
Q  704 gcatgtctgcaaggtatacctacaagctcccaaaaattacaactaca 750  Q
    ||||| || |||||||||||||| | |||||||||||||||||||||    
T  13649073 gcatgcctacaaggtatacctaccaactcccaaaaattacaactaca 13649119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 32620249 - 32620165
Alignment:
Q  28 atataataagcaatttagtagcatataatgaacaaattagtagagcatctaataaacaatttaccttcctttgaactttaccaactt 114  Q
    ||||||||| ||| ||||| ||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||||| ||||||    
T  32620249 atataataaacaaattagttgcatataataaacaaattagtag--catataataaacaatttaccttcctttgaactttatcaactt 32620165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 612
Target Start/End: Complemental strand, 51017193 - 51017102
Alignment:
Q  521 ggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacatatcttgaccatttatggcactcacatt 612  Q
    ||||||||||| || || || ||  ||||||| | || ||||||||||||||| || |||||||| ||||||||||| || ||||| |||||    
T  51017193 ggtcttcctggaccctttttataagcaggaggtaacaactcctcacattcaacctctggccacatgtcttgaccattgatagcacttacatt 51017102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 612
Target Start/End: Original strand, 22369914 - 22370035
Alignment:
Q  491 tcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacatatctt 590  Q
    |||||||| ||||| || || || || || |||||||||||| | ||||| ||  ||||||| | ||| || |||||||| || || |||||||| ||||    
T  22369914 tcatcaggttctcttcttctaagcttttttggtcttcctggtgccttcttataagcaggaggtaacatttcttcacattctacctctggccacatgtctt 22370013  T
Q  591 gaccatttatggcactcacatt 612  Q
    ||||||| || |||||||||||    
T  22370014 gaccattgatagcactcacatt 22370035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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