View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8048_high_10 (Length: 278)

Name: NF8048_high_10
Description: NF8048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8048_high_10
NF8048_high_10
[»] chr3 (12 HSPs)
chr3 (18-252)||(8862198-8862432)
chr3 (42-252)||(11158964-11159174)
chr3 (18-252)||(11147777-11148011)
chr3 (18-252)||(10890218-10890452)
chr3 (42-252)||(11129976-11130183)
chr3 (136-203)||(11245665-11245732)
chr3 (136-247)||(13853724-13853835)
chr3 (137-248)||(10078182-10078293)
chr3 (137-231)||(10185172-10185266)
chr3 (142-216)||(10528303-10528377)
chr3 (142-216)||(10672627-10672701)
chr3 (136-201)||(10501534-10501599)
[»] chr8 (2 HSPs)
chr8 (136-227)||(11485972-11486063)
chr8 (136-231)||(44956733-44956828)
[»] chr6 (2 HSPs)
chr6 (151-216)||(31678789-31678854)
chr6 (28-112)||(31678666-31678750)
[»] chr2 (1 HSPs)
chr2 (136-216)||(26907839-26907919)
[»] chr1 (1 HSPs)
chr1 (20-68)||(826998-827046)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 8862432 - 8862198
Alignment:
Q  18 gaagcattgtgatgtttctataatttgataatgataacacacgcaagcttccaaatgtgggtagcaaatcatccaccacccttttagataagtaattaaa 117  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8862432 gaagcattgtgatgtttctatattttgataatgataacacacgcaaccttccaaatgtgggtagcaaatcatcaaccacccttttagataagtaattaaa 8862333  T
Q  118 agtcctccaagagcaacagggtaggaaggttctcaagcatttgaatttgtagaaaattttaaacttcttgacaatgtcatactcttcttgactatatgag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8862332 agtcctccaagagcaacagggtaggaaggttctcaagcatttgaatttgtagaaaattttaaacttcttgacaatgtcatactcttcttgactatatgag 8862233  T
Q  218 caatgacgaacattcttggaggtatcaccaccaaa 252  Q
    |||||||||||||||||||||||||||||||||||    
T  8862232 caatgacgaacattcttggaggtatcaccaccaaa 8862198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 42 - 252
Target Start/End: Original strand, 11158964 - 11159174
Alignment:
Q  42 ttgataatgataacacacgcaagcttccaaatgtgggtagcaaatcatccaccacccttttagataagtaattaaaagtcctccaagagcaacagggtag 141  Q
    ||||||| || ||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  11158964 ttgataacgacaacacacgcaaccttccaaatgtgggtagcaaatcatcaaccacctttttagataagtaattaaaattcctccaagagcaacagggtag 11159063  T
Q  142 gaaggttctcaagcatttgaatttgtagaaaattttaaacttcttgacaatgtcatactcttcttgactatatgagcaatgacgaacattcttggaggta 241  Q
    | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11159064 gtaggttctcaagcatttgaatttgtagaaaattttaaacttcttcacaatgtcatactcttcttgactatatgagcaatgacgaacattcttggaggta 11159163  T
Q  242 tcaccaccaaa 252  Q
    |||||||||||    
T  11159164 tcaccaccaaa 11159174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 11147777 - 11148011
Alignment:
Q  18 gaagcattgtgatgtttctataatttgataatgataacacacgcaagcttccaaatgtgggtagcaaatcatccaccacccttttagataagtaattaaa 117  Q
    ||||||||||||||||| |||| |||||||| |||| ||||||||| ||||| |||||||||||||||||||| |||||| || ||||||||||||||||    
T  11147777 gaagcattgtgatgtttgtatattttgataacgatagcacacgcaaccttcctaatgtgggtagcaaatcatcgaccacctttatagataagtaattaaa 11147876  T
Q  118 agtcctccaagagcaacagggtaggaaggttctcaagcatttgaatttgtagaaaattttaaacttcttgacaatgtcatactcttcttgactatatgag 217  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||| |||||  |||||||||||| ||||||||||||  |||||| | ||||||    
T  11147877 attcctccaagagcaacagggtaggaaggttctcaagcatttgagtttgtggaaaagcttaaacttcttggcaatgtcatactgctcttgattgtatgag 11147976  T
Q  218 caatgacgaacattcttggaggtatcaccaccaaa 252  Q
    |||||||||||||||||||| |  |||||||||||    
T  11147977 caatgacgaacattcttggaagcgtcaccaccaaa 11148011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 10890452 - 10890218
Alignment:
Q  18 gaagcattgtgatgtttctataatttgataatgataacacacgcaagcttccaaatgtgggtagcaaatcatccaccacccttttagataagtaattaaa 117  Q
    ||||||||||||||||| |||| |||||||| |||||||||||||| ||||||||||| ||||  | |||||| || | | |||||||||||||||| ||    
T  10890452 gaagcattgtgatgtttgtatattttgataacgataacacacgcaaccttccaaatgttggtaaaatatcatcaacaaactttttagataagtaatttaa 10890353  T
Q  118 agtcctccaagagcaacagggtaggaaggttctcaagcatttgaatttgtagaaaattttaaacttcttgacaatgtcatactcttcttgactatatgag 217  Q
     ||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||| |||||||| |||||| ||||||||| ||||||| ||||||||    
T  10890352 ggtcctccaagagccacatggtaggaaggttctcaagaatttgaacttgtagaaaatcttaaactttttgacagtgtcatacttttcttgattatatgag 10890253  T
Q  218 caatgacgaacattcttggaggtatcaccaccaaa 252  Q
    |||||||||||||| |||| ||  |||||||||||    
T  10890252 caatgacgaacatttttgggggcgtcaccaccaaa 10890218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 42 - 252
Target Start/End: Original strand, 11129976 - 11130183
Alignment:
Q  42 ttgataatgataacacacgcaagcttccaaatgtgggtagcaaatcatccaccacccttttagataagtaattaaaagtcctccaagagcaacagggtag 141  Q
    |||||||||| |||||||||||  ||| ||||||||||||||||||||| ||||||||||||| ||||||||| |||  || ||  |  || || |||||    
T  11129976 ttgataatgacaacacacgcaacattctaaatgtgggtagcaaatcatcaaccacccttttagttaagtaatttaaatcccacc--gtaca-caaggtag 11130072  T
Q  142 gaaggttctcaagcatttgaatttgtagaaaattttaaacttcttgacaatgtcatactcttcttgactatatgagcaatgacgaacattcttggaggta 241  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||| |||||||      
T  11130073 gaaggttctcaagcatttgaatttgtagaaaatcttaaacttcttgacagtgtcatacttttcttgattatatgagcaatgacgaacatttttggaggcg 11130172  T
Q  242 tcaccaccaaa 252  Q
    |||||||||||    
T  11130173 tcaccaccaaa 11130183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 11245665 - 11245732
Alignment:
Q  136 gggtaggaaggttctcaagcatttgaatttgtagaaaattttaaacttcttgacaatgtcatactctt 203  Q
    |||||| ||| |||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||    
T  11245665 gggtagaaagcttctcaagcatttgaatttgtagagaatctgaaacttcttgacaatgtcatactctt 11245732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 247
Target Start/End: Original strand, 13853724 - 13853835
Alignment:
Q  136 gggtaggaaggttctcaagcatttgaatttgtagaaaattttaaacttcttgacaatgtcatactcttcttgactatatgagcaatgacgaacattcttg 235  Q
    |||||||||| ||| |||||||||||| |||||||   | | ||||||  ||| |||||||||| |||||||  |||||||| ||||||||||| | |||    
T  13853724 gggtaggaagcttcgcaagcatttgaaattgtagattttctcaaactttctgaaaatgtcatacacttcttggttatatgagaaatgacgaacagttttg 13853823  T
Q  236 gaggtatcacca 247  Q
    ||| | ||||||    
T  13853824 gagatgtcacca 13853835  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 248
Target Start/End: Complemental strand, 10078293 - 10078182
Alignment:
Q  137 ggtaggaaggttctcaagcatttgaatttgtagaaaattttaaacttcttgacaatgtcatactcttcttgactatatgagcaatgacgaacattcttgg 236  Q
    ||||| ||||||| ||||||||| || |||| ||||   ||||||||  | ||||| ||||||||||||||| |||||||   |||||||||||| |  |    
T  10078293 ggtagaaaggttcgcaagcatttcaaattgtggaaaggcttaaactttgttacaatatcatactcttcttgaatatatgaaacatgacgaacattttcag 10078194  T
Q  237 aggtatcaccac 248  Q
    || |||||||||    
T  10078193 agatatcaccac 10078182  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 10185266 - 10185172
Alignment:
Q  137 ggtaggaaggttctcaagcatttgaatttgtagaaaattttaaacttcttgacaatgtcatactcttcttgactatatgagcaatgacgaacatt 231  Q
    ||||| ||||||| ||||||||| || |||| ||||   ||||||||  | || |||||||||||||||||| |||||||   ||||||||||||    
T  10185266 ggtagaaaggttcgcaagcatttcaaattgtggaaaggcttaaactttgttacgatgtcatactcttcttgaatatatgaaacatgacgaacatt 10185172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 10528377 - 10528303
Alignment:
Q  142 gaaggttctcaagcatttgaatttgtagaaaattttaaacttcttgacaatgtcatactcttcttgactatatga 216  Q
    |||| ||| ||||||||| || |||| |||| ||||||||||| ||| |||||||||| |||||||  |||||||    
T  10528377 gaagcttcacaagcatttaaaattgttgaaacttttaaacttcatgaaaatgtcatacacttcttgggtatatga 10528303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 10672701 - 10672627
Alignment:
Q  142 gaaggttctcaagcatttgaatttgtagaaaattttaaacttcttgacaatgtcatactcttcttgactatatga 216  Q
    |||| ||| ||||||||| || |||| |||| ||||||||||| ||| |||||||||| |||||||  |||||||    
T  10672701 gaagcttcacaagcatttaaaattgttgaaacttttaaacttcatgaaaatgtcatacacttcttgggtatatga 10672627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 10501599 - 10501534
Alignment:
Q  136 gggtaggaaggttctcaagcatttgaatttgtagaaaattttaaacttcttgacaatgtcatactc 201  Q
    |||||||||| ||| |||||||||||| ||||||||| | || |||||| ||| | ||||||||||    
T  10501599 gggtaggaagcttcgcaagcatttgaaattgtagaaattcttcaacttcatgaaattgtcatactc 10501534  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 11486063 - 11485972
Alignment:
Q  136 gggtaggaaggttctcaagcatttgaatttgtagaaaattttaaacttcttgacaatgtcatactcttcttgactatatgagcaatgacgaa 227  Q
    |||||||||| ||| |||||||||||| ||||||||| | ||||||||| ||| |||||||  | |||||||| |||||||  |||||||||    
T  11486063 gggtaggaagcttcgcaagcatttgaaattgtagaaattcttaaacttcatgaaaatgtcacgcacttcttgattatatgacaaatgacgaa 11485972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 44956733 - 44956828
Alignment:
Q  136 gggtaggaaggttctcaagcatttgaatttgtagaaaattttaaacttcttgacaatgtcatactcttcttgactatatgagcaatgacgaacatt 231  Q
    ||||| |||| ||| |||| ||||||| ||||||||| | ||||||||| ||| ||||||||||||||||||  |||||||  |||| ||||||||    
T  44956733 gggtaagaagcttcgcaaggatttgaaattgtagaaattcttaaacttcatgaaaatgtcatactcttcttggttatatgacaaatggcgaacatt 44956828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 31678789 - 31678854
Alignment:
Q  151 caagcatttgaatttgtagaaaattttaaacttcttgacaatgtcatactcttcttgactatatga 216  Q
    |||||||||||| |  || ||||||| ||||||||||| ||||||||||||||||||  |||||||    
T  31678789 caagcatttgaaatcataaaaaatttcaaacttcttgaaaatgtcatactcttcttggttatatga 31678854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 31678666 - 31678750
Alignment:
Q  28 gatgtttctataatttgataatgataacacacgcaagcttccaaatgtgggtagcaaatcatccaccacccttttagataagtaa 112  Q
    |||||||||||||   ||||| |||||||||||||| |||| || |||||||| || |||||| || |||  |||||| ||||||    
T  31678666 gatgtttctataaccagataacgataacacacgcaaccttctaagtgtgggtatcacatcatcaacaacctgtttagacaagtaa 31678750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 26907919 - 26907839
Alignment:
Q  136 gggtaggaaggttctcaagcatttgaatttgtagaaaattttaaacttcttgacaatgtcatactcttcttgactatatga 216  Q
    |||||||||| ||| ||||||||||||  ||||||||   ||||||||| ||| |  |||||||||||||||| |||||||    
T  26907919 gggtaggaagcttcgcaagcatttgaaactgtagaaaggcttaaacttcgtgaaatggtcatactcttcttgattatatga 26907839  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 827046 - 826998
Alignment:
Q  20 agcattgtgatgtttctataatttgataatgataacacacgcaagcttc 68  Q
    ||||| ||||||||| ||||||||||||| |||| ||||||||| ||||    
T  827046 agcatagtgatgtttttataatttgataaggatagcacacgcaaccttc 826998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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