View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8048_high_21 (Length: 223)
Name: NF8048_high_21
Description: NF8048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8048_high_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 37189310 - 37189119
Alignment:
| Q |
17 |
cacaattgagttgaaattaatcaattacaactcttggtttttgtgtcctcctgaagnnnnnnnntgaattaattacattcttaacatagagaccaaacag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37189310 |
cacaattgagttgaaattaatcaattacaactcttggtttttgtgtcctcctcaagaaaaaaaatgaattaattacattcttaacatagagaccaaacag |
37189211 |
T |
|
| Q |
117 |
caagaccaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaaccaaaccacataatgcattcacatattctt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37189210 |
caagaccaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaaccaaaccacataatgcattcacatattctt |
37189119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 37894210 - 37894022
Alignment:
| Q |
17 |
cacaattgagttgaaattaatcaa-ttacaactcttggtttttgtgtcctcctgaagnnnnnnnntgaattaattacattcttaacatagagaccaaaca |
115 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37894210 |
cacaattgagttgtaattaatcaaattacaactcttggtttttgtgtcctcctgaa----aaaaatgaattaattacattcttaacatagagaccaaaca |
37894115 |
T |
|
| Q |
116 |
gcaagaccaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaaccaaaccacataatgcattcacatattctt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37894114 |
gcaagaccaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaaccaaaccacataatgcattcacatattctt |
37894022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University