View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8048_high_3 (Length: 517)
Name: NF8048_high_3
Description: NF8048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8048_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 21 - 505
Target Start/End: Complemental strand, 41804777 - 41804293
Alignment:
| Q |
21 |
cccataccctgcccataaaggttatttagctacaaatttttatgttacatattagcctcttactcacacaacattgttttatttagatacatatagatat |
120 |
Q |
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| T |
41804777 |
cccataccctgcccataaaggttatttagctacaaatttttatgttacatattagtctcttactcacacaacattgttttatttagatacatatagatat |
41804678 |
T |
|
| Q |
121 |
attaatataagacacaacacaagtcattgccacacaaatgatcattgatcatggaatatcacttacaacttgaggagcatctttgccactagatgcgata |
220 |
Q |
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| T |
41804677 |
attaatataacacacaacacaagtcattgccacacaaatgatcattgatcatggaatatcacttacaacttgaggagcatctttgccactagatgcgata |
41804578 |
T |
|
| Q |
221 |
ttgttacttgtgtgatctatagaaggacaaaagttgtcatgcaaagtccaaaggtaaggattaaccaaacacattttatacaaaatcatacaatctatac |
320 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41804577 |
ttgttacttgtgtgatctatagaaggacaaaaggtgtcatgcaaagtccaaaggtaaggattaaccaaacacattttatacaaaatcatacaatctatac |
41804478 |
T |
|
| Q |
321 |
aatgaccaaacttttgagatttgtaaataccatcatctttctttggtggattacctcttcctccatcctcagcattataaccattcagaaatattgccac |
420 |
Q |
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| T |
41804477 |
aatgaccaaacttttgagatttgtaaataccatcatctttctttggtggattacctcttcctccatcctcagcattataaccattcagaaatattgccac |
41804378 |
T |
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| Q |
421 |
aacaagggaaactagaacaactgaaacaatggcttttcccatagttgtatttataaatgtttgtttttattttcttattgatatt |
505 |
Q |
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| T |
41804377 |
aacaagggaaactagaacaactgaaacaatggcttttcccatagttgtatttataaatgtttgtttttattttcttattgatatt |
41804293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 33 - 505
Target Start/End: Complemental strand, 3385483 - 3385011
Alignment:
| Q |
33 |
ccataaaggttatttagctacaaatttttatgttacatattagcctcttactcacacaacattgttttatttagatacatatagatatattaatataaga |
132 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3385483 |
ccataaaggttatttagctacaaatttttatgttgcatattactctcttactcacacaacattgttttatttagatacatatagatatattaatataaca |
3385384 |
T |
|
| Q |
133 |
cacaacacaagtcattgccacacaaatgatcattgatcatggaatatcacttacaacttgaggagcatctttgccactagatgcgatattgttacttgtg |
232 |
Q |
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| T |
3385383 |
cacaacacaagccattgaaacacaaacgatcattgatcatggaagatcacttacaacttgaggagcatctttgccactggatgcgatcttgttacttctg |
3385284 |
T |
|
| Q |
233 |
tgatctatagaaggacaaaagttgtcatgcaaagtccaaaggtaaggattaaccaaacacattttatacaaaatcatacaatctatacaatgaccaaact |
332 |
Q |
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| T |
3385283 |
taatcattagaagaacaaaacttgtcatgcaaagtccaaaggtaaggattaaccaaacatatattatacaaaatcgtacaatctagacattgcccaaact |
3385184 |
T |
|
| Q |
333 |
tttgagatttgtaaataccatcatctttctttggtggattacctcttcctccatcctcagcattataaccattcagaaatattgccacaacaagggaaac |
432 |
Q |
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||||||||||||||||| ||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
3385183 |
tttgagatttgtaaatagcatcatctttcttcagttgattacctcttcctccatcctcggcattataaccattcagaagtattgccactacaagggaaac |
3385084 |
T |
|
| Q |
433 |
tagaacaactgaaacaatggcttttcccatagttgtatttataaatgtttg-tttttattttcttattgatatt |
505 |
Q |
| |
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|||||||| |||| |||||| ||| ||||||| ||||| |||||||| ||| |||||||||||||||||||||| |
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| T |
3385083 |
tagaacaagtgaagcaatggttttccccatag-tgtatatataaatgcttgttttttattttcttattgatatt |
3385011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 465
Target Start/End: Complemental strand, 34357232 - 34357101
Alignment:
| Q |
331 |
cttttgagatttgtaaataccatcatctttctttggtggattacctcttcctccatcctcagcattataaccattcagaaatattgccacaacaagggaa |
430 |
Q |
| |
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||||||| |||| |||| ||||||||||||||| || | ||| |||||||| || |||||||| ||| |||||||| ||||| ||||| ||| || |
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| T |
34357232 |
cttttgatatttataaacaccatcatctttcttatgttggttatctcttcctgcaccctcagcaccatagccattcag---cattgcaacaactaggaaa |
34357136 |
T |
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| Q |
431 |
actagaacaactgaaacaatggcttttcccatagt |
465 |
Q |
| |
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|||||||||| |||| |||||| |||| ||||||| |
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| T |
34357135 |
actagaacaagtgaagcaatggtttttgccatagt |
34357101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 465
Target Start/End: Complemental strand, 4218271 - 4218140
Alignment:
| Q |
328 |
aaacttttgagatttgtaaataccatcatctttctttggtggattacctcttcctccatcctcagcattataaccattcagaaatattgccacaacaagg |
427 |
Q |
| |
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||||||||||||||||||||||| ||||||| || ||| |||||||||||| | |||||||| |||| |||||| || ||||| ||||||||| |
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| T |
4218271 |
aaacttttgagatttgtaaatacgatcatct---ttaggttcattacctcttccagtaccctcagcactatagccattc---aaaattgcaacaacaagg |
4218178 |
T |
|
| Q |
428 |
gaaactagaacaactgaaacaatggcttttcccatagt |
465 |
Q |
| |
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||||| ||||| |||| |||||| |||| ||||||| |
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| T |
4218177 |
agaactaaaacaattgaagcaatggtttttgccatagt |
4218140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 407
Target Start/End: Complemental strand, 4215726 - 4215651
Alignment:
| Q |
332 |
ttttgagatttgtaaataccatcatctttctttggtggattacctcttcctccatcctcagcattataaccattca |
407 |
Q |
| |
|
|||| ||||||||||||| |||| |||||||||||| |||||| | || || || |||||||| ||||||||||| |
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|
| T |
4215726 |
ttttcagatttgtaaatatcatcgtctttctttggttgattacttgtttctgcaccctcagcacaataaccattca |
4215651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 358
Target Start/End: Original strand, 41814327 - 41814389
Alignment:
| Q |
296 |
ttatacaaaatcatacaatctatacaatgaccaaacttttgagatttgtaaataccatcatct |
358 |
Q |
| |
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||||||||||||| |||||| |||| ||| ||| ||||||||||||||||||| ||||||| |
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| T |
41814327 |
ttatacaaaatcaaacaatcgataccctgatcaagcttttgagatttgtaaatatgatcatct |
41814389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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