View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8048_high_6 (Length: 429)
Name: NF8048_high_6
Description: NF8048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8048_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 7 - 400
Target Start/End: Complemental strand, 34316921 - 34316528
Alignment:
| Q |
7 |
gttttgacaacagtttctgcttataaatttaacttttatgaaaattcaacttgctaaatgaatatgttcaaaattcagtgcatttagtttattctagggg |
106 |
Q |
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| T |
34316921 |
gttttgacaacagtttctgcttataaatttaacttttatgaaaattcaacttgctaaaggaatatgttcaaaattcagtgcatttagtttattctagggg |
34316822 |
T |
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| Q |
107 |
accatagaaaacaaaggagaaaatacctggtcgagactgagacaaaataagaacatgccatatttttagtacggcattctcaataagtttctaattttga |
206 |
Q |
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| T |
34316821 |
accatagaaaacaaaggagaaaatacctggtcgagactgagacaaaataagaacatgccatatttttagtacggcattctcaataagtttctaattttga |
34316722 |
T |
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| Q |
207 |
accctactagataaccaagatgtataacggtgttctcttggattgtttatttaataagttaaacggtgaatttgaaaattgtctattcttttagttggat |
306 |
Q |
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| T |
34316721 |
accctactagataaccaagatgtataacggtgttctcttggattgtttatttaataagttaaagggtgaattcgaaaattgtctatttttttagttgaat |
34316622 |
T |
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| Q |
307 |
cagactctcaaattctacggataaagtgtgagtgataagtcccactatagtaaacatggatatgctaaactataaatatataagaggtgaccac |
400 |
Q |
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| T |
34316621 |
cagactctcaaattctacggattaagtgtgagtgataagtcccactatagtaaacatagatatgctaaactataaatatataagaggtgaccac |
34316528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 34309281 - 34309171
Alignment:
| Q |
74 |
tcaaaattcagtgcatttagtttattctaggggaccatagaaaacaaaggagaaaatacctggtcgagactgagacaaaataagaacatgccatat--tt |
171 |
Q |
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| T |
34309281 |
tcaaaattcaatgtatttagattatttaaggagaccatagaaaacaaaagagaaaaaacctcgtccaggtcgagacaaattgagaacaagccatcttgtt |
34309182 |
T |
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| Q |
172 |
ttagtacggca |
182 |
Q |
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| T |
34309181 |
ttagtacggca |
34309171 |
T |
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