View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8048_low_10 (Length: 394)
Name: NF8048_low_10
Description: NF8048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8048_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 14 - 376
Target Start/End: Complemental strand, 6269467 - 6269105
Alignment:
| Q |
14 |
atatgttattgaatcaatagactatttttctcagcattggaagttgattgatatataatggattttgtgcttttagacatacaagtcaatgtacgatgaa |
113 |
Q |
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| T |
6269467 |
atatgtcattgaatcaatagactatttttctcagcattggaagttgattgatatataatggattttgtgcttttagacatacatgtcaatgtacgatgaa |
6269368 |
T |
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| Q |
114 |
ggatcaatatagttatattgaatcttagaaagtatacaatcgatcaatataaaccattgaatgaggaattaccaaagtctaatcccatcacaacttgtct |
213 |
Q |
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| T |
6269367 |
ggatcaatatagttatattgaatcttagaaagtatacaatcgatcaatataaaccattgaatgaggaattatcaaagtctaatcccatcacaacttttct |
6269268 |
T |
|
| Q |
214 |
ttatattttcaatcaatcatttaaaattcttttaaacaaacaacttcgcttttaatttgatttaaaatcttacgaatttaagaaagatttgaactaatac |
313 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6269267 |
ttatattttcaatccatcatttaaaattcttttaaacaaacaacttcgcttttaatttgatttaaaatcttacgaatttaagaaagatttgaactaatac |
6269168 |
T |
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| Q |
314 |
gttatctttgttgtttgatattgataacctaaaaaatgttggatattaccttgtagttatcct |
376 |
Q |
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| T |
6269167 |
gttatctttgttgtttgatattgataacctaaaaaatgttggatattaccttgcacttatcct |
6269105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 24801556 - 24801480
Alignment:
| Q |
132 |
tgaatcttagaaagtatacaatcgatcaatataaaccattgaatgaggaattaccaaagtctaatcccatcacaact |
208 |
Q |
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| T |
24801556 |
tgaatcttagaaagtttacaatcgataaagagtaaccattgattgagaagttactaaattctaatcccagcacaact |
24801480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 41248769 - 41248673
Alignment:
| Q |
132 |
tgaatcttagaaagtatacaatcgatcaatataaaccattgaatgaggaattaccaaagtctaatcccatcacaacttgtc-tttatattttcaatc |
227 |
Q |
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||||||||| |||||||||||| ||||| || ||| ||| ||||| | |||| |||||||||||||||| ||||| || ||||||||| ||||| |
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| T |
41248769 |
tgaatcttaaaaagtatacaattaatcaacatgaactatttaatgaatatttacttaagtctaatcccatcataacttttcttttatatttgcaatc |
41248673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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