View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8048_low_12 (Length: 355)
Name: NF8048_low_12
Description: NF8048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8048_low_12 |
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| [»] scaffold0272 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 21268009 - 21267684
Alignment:
| Q |
19 |
gcttacatgttcgagtgagcataaattctaagaagttacctcgagtgaattgattactgtggaaatttacaactatcannnnnnnnc--agggaatctaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
21268009 |
gcttacatgttcgagtgagcataaattctaagaagttacctcgagtgaattgattattgtggaaatttacaactatcatttttattttgagggaatctaa |
21267910 |
T |
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| Q |
117 |
atatacttaggttctcccatgaaaacatgnnnnnnnnctggccatcttatatacaagataacaaaagtcagaatatgcgaattaacttggttctgataca |
216 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21267909 |
atatacttagggtctcccatgaaaacatgttttttt-ctggccatcttatatacaagataacaaaagtcagaatatgcgacttaacttggttctgataca |
21267811 |
T |
|
| Q |
217 |
aagcaatgccaatgatgcctataacattatcgcttatgacgccaccacaaccaacaactctgtcgatcaccacagctccattacagttaagagccacaaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21267810 |
aagcaatgccaatgatgcctataacattatcgcttatgacgccaccacagccaacaactctgtcgatcaccacagctccattacagttaagagccacaaa |
21267711 |
T |
|
| Q |
317 |
accgattgtattggttccttctagtat |
343 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
21267710 |
accggctgtattggttccttctagtat |
21267684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 21303946 - 21303905
Alignment:
| Q |
277 |
tgtcgatcaccacagctccattacagttaagagccacaaaac |
318 |
Q |
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| T |
21303946 |
tgtcgatcacgacagctccattacagttaagagtcacaaaac |
21303905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 10382 - 10427
Alignment:
| Q |
274 |
ctctgtcgatcaccacagctccattacagttaagagccacaaaacc |
319 |
Q |
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| T |
10382 |
ctctgtcgatcgccacagctccatcgaagttaagagccacaaaacc |
10427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 71680 - 71725
Alignment:
| Q |
274 |
ctctgtcgatcaccacagctccattacagttaagagccacaaaacc |
319 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
71680 |
ctctgtcgatcgccacagctccatcgaagttaagagccacaaaacc |
71725 |
T |
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